| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0894 |
|---|
| Symbol | |
|---|
| ID | 7970069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 981713 |
|---|
| End bp | 984373 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791490 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_002942811 |
|---|
| Protein GI | 239813901 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATGT TCGATCGCGC GGGCCCGTTC GCCCGCGCCC GTGGTTCGTC CGCGTCCATG
AGAAGGCGCG TCACCCTGCA CTCGCCCCTG GGCGACGCCT TGCAGTTTTA TCGTTTGGCC
GGACGCGAGG CGCTCAGCCA GGCCTACGCC TTCGACCTGG ACCTGCTGGG CAGCAGCAAT
GCGCTGGACC CCAAGTCCAT CCTGGGCAAG CCCGCCGCCG TGGTGATGGA GACCGAGAGC
GGCGCCCCGC GCTACCTCGC CGGCCTCGTC ACCCGCTTCG GCCTGTCGCA CGAAGACGAC
CGCCAGGCCT TCTACAGGAT GCGGCTGCGC CCCTGGCTGT GGCTGGCCAC GCGCCGCTCC
GATTTCCGCA TCTTCCAGGA CCAGACCGTG CCCGAGATCG TTTCGGCCGT GCTGGGCCGC
TACGGTTATC CCCTTGAGCA GAAGCTCCAC CGCAGCTATC GCCCCTGGAC CTACTGCGTG
CAGTACCGCG AGGACGATTT TTCCTTCGTG TCCCGCCTCT GTGAACACGA GGGCATCTAT
TACCACTTCC GCCACGAGGC CGAGCAGCAC GTGCTGGTCT TTGCCGACGA CATCGCCGCC
TCCCACGCCC CGCTGCCCGG CGGCGAGACC GTGCGCTACC ACCCGCACGA GAAGGCCGGC
ATGACCGGCG GGCTGGAGGC CAGCGAGCGC ATCTACGAAT GGGCATCCTC GGATGAAGTG
CGCCCTGGCC AGTACTTCAA CGACGACTAC GACTTCGAGA AGCCCCGGGC CGAGCTGTCG
CACCTGCGGC AAATGCCGCC CGGGCACGAC CACGACGATT TCGAGCACTA CGAATGGCCC
GGCGGCTTCA CCCAGCATGA CGATGGCGAG ACCTATGCAC GCCTCCGCGC CGAGGAGCAG
CTGAGCGAAC GCAGCCGGGT CACAGGCCAG GCCAACCGGC GCGATCTGGC GCCTGGCTGC
ACCTTCACCC TCACCCACCA CCCGCGCGAA GACCAGAACC GCCAGCACCT GCTGCTGGCC
GTGGACTACG ACCTTCAGGA GAACCTGCAG GCCAGCGAAG GCGCCAACGC CTCCGAAGGC
TCGGTGCAGC GCTTCGCCTT CGAGGCCCAG CCCACCAGCT ACGCCTGGCG CCCGCGCCGC
AGCACGCCCA AGCCGCGCAC CCGAGGCCCG CAGACCGCCG TGGTGGTGGG CCCGGCCGGC
GAGGAGATCT GGACCGACCG GTATGGCCGC ATCAAGGTGC AGTTCCACTG GGACCGCCTG
GGCCAACGGA ACGAGAACTC GAGCTGCTGG CTGCGCGTGT CCACCGCCTG GGCCGGCGCC
ACCTTCGGCG CGGCCGCGCT GCCGCGCATA GGCCAGGAAG TGATCGTCGA TTTCCTGAAC
GGCGACCCCG ACCACCCGAT CGTCACCGGC CGGGTGCACA ACGCCGATGA AATGCCGGCC
TGGCAGTTGC CCGGCCAGGC TCACCTCTCG GGCTTGCGCA GCCGTGAGCT CAGCGGCAGC
CGCTCCAACC ACTTGGTGCT CGACGATTTC GCAGGAAAGA TTCAAAGCCA GCTCAAGAGC
GACCACAACA GCTCAAGCCT GAGTCTCGGG CACATCGCCC GCATTGAGGA CGCTGCGGGC
CGCAAGGACC TGCGCGGCCA GGGCTTCGAG CTACGCACCG ACGGGCATGG CGCCGTGCGC
GCCGCCCGCG GCCTGCTGGT GAGCACCGAG GCGCGCCCCA ACGCCCAGGG GCACATCACC
GACATGCGCG AGACCATGGC CAGGCTCACA GAGGGGCGCG ACCTGCACGA GAGCCTGGCG
CAGGTGGCGC AGCAGGCCAA GGCCCATGAG ACCGGCGACC AGGACGAGGT GGCCCGCGCG
CTGAAGGCGC AGAACGACGC GATCAGGGGA CAAGGCGGCC CCTCGGGCCC GGGCGAGTTC
CCGGAGTTCC AGGAGCCGCA CCTGACCTTG GCAAGCCCGG CCGGCATCCA GGCCACCACG
GCCGCCAGCA CCCACCTCGT GAGCGTGGAG CACACGGCCA TCAGCAGCGG TGCGCACACC
AGCGTGGCCA CGGGCAACAG CTTCCTGGTG AGCGCCAAGG ACGCGGTGCG CATGGTCGCC
TTCAATCACG GCATCCGCAT GGCGGCGGCC GCGGCCGACA TCGATATCAC GACGCTCAAG
GACAGCATCA ACGCGCTGGC CAAGCTGGAC ATCAAGATGG AGGCCAACCG GATCACCATC
ACGGCCAAGG AAGAGGTCCT GATCAACGGC GGCTCCAGCT ACACGCGCTG GACGGCCGGC
GGCATCGAGA GCGGCACCAA CGGGACGTGG CGCGCGCATG CGGCTTCGCA TTCGATGGTG
GGGCCCAGGA GCGTGCCGGT GCCCGAAGCC AGCCTGCCAC GGCTCACCGG CAACTATCGC
GAGTTCTTCA TCCTTCAGGA CGAAGCCGGC AAGCCTCTGC CCAACCACCC CTACGAGATG
TTCCTCGACG GTGCCCTGTT CGCCAAGGAA AGGACGGATG CGCAAGGCAG GACGAAGGTG
GCGAATACCC GCGAGCCGGA GCGGGTCTCG GCCGAGCCGG GGATCGAGGA TGACCGCTGG
TTCTACGTCA GTGCGACGTA CTGGGACGGC GCGACACCTT ACGAGCTGGA TTTCCTCAAG
GACGGTCGCC AGGAAGCCTG A
|
|---|
| Protein sequence | MSMFDRAGPF ARARGSSASM RRRVTLHSPL GDALQFYRLA GREALSQAYA FDLDLLGSSN
ALDPKSILGK PAAVVMETES GAPRYLAGLV TRFGLSHEDD RQAFYRMRLR PWLWLATRRS
DFRIFQDQTV PEIVSAVLGR YGYPLEQKLH RSYRPWTYCV QYREDDFSFV SRLCEHEGIY
YHFRHEAEQH VLVFADDIAA SHAPLPGGET VRYHPHEKAG MTGGLEASER IYEWASSDEV
RPGQYFNDDY DFEKPRAELS HLRQMPPGHD HDDFEHYEWP GGFTQHDDGE TYARLRAEEQ
LSERSRVTGQ ANRRDLAPGC TFTLTHHPRE DQNRQHLLLA VDYDLQENLQ ASEGANASEG
SVQRFAFEAQ PTSYAWRPRR STPKPRTRGP QTAVVVGPAG EEIWTDRYGR IKVQFHWDRL
GQRNENSSCW LRVSTAWAGA TFGAAALPRI GQEVIVDFLN GDPDHPIVTG RVHNADEMPA
WQLPGQAHLS GLRSRELSGS RSNHLVLDDF AGKIQSQLKS DHNSSSLSLG HIARIEDAAG
RKDLRGQGFE LRTDGHGAVR AARGLLVSTE ARPNAQGHIT DMRETMARLT EGRDLHESLA
QVAQQAKAHE TGDQDEVARA LKAQNDAIRG QGGPSGPGEF PEFQEPHLTL ASPAGIQATT
AASTHLVSVE HTAISSGAHT SVATGNSFLV SAKDAVRMVA FNHGIRMAAA AADIDITTLK
DSINALAKLD IKMEANRITI TAKEEVLING GSSYTRWTAG GIESGTNGTW RAHAASHSMV
GPRSVPVPEA SLPRLTGNYR EFFILQDEAG KPLPNHPYEM FLDGALFAKE RTDAQGRTKV
ANTREPERVS AEPGIEDDRW FYVSATYWDG ATPYELDFLK DGRQEA
|
|---|
| |