| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0876 |
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| Symbol | |
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| ID | 7972092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 964061 |
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| End bp | 964981 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791474 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002942795 |
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| Protein GI | 239813885 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5006] Predicted permease, DMT superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACGA CCTCACTCGC CACCGCCGCC AAGCCCGCGC CCCGCATCGC CTTCGAATGG
ATGCTGCTCG CCGTGCTCGC CACCTGCTGG GGCGCCTCCT ACACCTTCAT CAAGATCGGC
GTGCAGACGC TGCCGCCCGT GACGCTGATC GCGGCGCGCA CGCTGATCGC CGGCCTGCTG
CTGCTCGCGC TGCTGCGCCT GCGCGGCGTG CGGCTGCCGC GGGAGCCCGC GATGTGGCGC
CGCTTCGCGC TGCAGGCCTG CTTGAACAGC GTGCTGCCGT TCACGCTCAT CGCGTGGGCC
GAGCGCAGCG TGGATGCCGG GCTCGCCACC ATCCTCAACT CGACCTCGCC GATCTTCATC
TTCCTGCTGG GCCTGGGCGT GGGCGGTGCG GAGAAGCCGA CGCTGCGCCG GCTCTTCGGC
GTGGCGGCGG GCCTCGCGGG CATCTGCATG ATCGTCGGGG TCGAGGCGCT GCACGGGCTC
GGGCATTCGC TGCTCGCCCA ACTGGGACTG GTGGCGGCAG CCGTCTGCTA CGGCTGCGCG
GCCATGTTCG GCCGCGTGTT CAAGGGACTC GATCCGATGG TGCCCGCCGC GGGCTCGCTG
CTCTGCGGCG CGGCGATGCT GCTGCCCGCG AGCCTCGCGA TCGACCGGCC GTGGACGCTC
GCGCCATCGG CCGCGTCGAT GATTGCCGTG CTGGCGCTCG CGGTGCTCTC CACGGCCCTC
GCCTTCACGA TCTACTTCCG GCTCATCAAG ACCTTGGGGC CGATGTCGAC GGCCGCGCAG
GCCTACCTGC GCGTGCCCAT CGGCGTGATG ATCGGCGTGG TGTTCCTGGG CGAAGCGCTC
TCGCCCACCG CGTGGGCCGG GCTCGCGTGC ATCGCGGCGG GCGTGGTCGC GATGACGGTG
CCCGCGCGCG GGGGCCCTTG A
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| Protein sequence | MPTTSLATAA KPAPRIAFEW MLLAVLATCW GASYTFIKIG VQTLPPVTLI AARTLIAGLL
LLALLRLRGV RLPREPAMWR RFALQACLNS VLPFTLIAWA ERSVDAGLAT ILNSTSPIFI
FLLGLGVGGA EKPTLRRLFG VAAGLAGICM IVGVEALHGL GHSLLAQLGL VAAAVCYGCA
AMFGRVFKGL DPMVPAAGSL LCGAAMLLPA SLAIDRPWTL APSAASMIAV LALAVLSTAL
AFTIYFRLIK TLGPMSTAAQ AYLRVPIGVM IGVVFLGEAL SPTAWAGLAC IAAGVVAMTV
PARGGP
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