| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0873 |
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| Symbol | |
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| ID | 7972089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 960493 |
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| End bp | 961206 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791471 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_002942792 |
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| Protein GI | 239813882 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCG CTTCCGAAGA AGAAGGCATC CGCCTGGCCA AGCGCGTGGC CGCCATCGCG
GGCTGCTCGC GGCGCGAGGC CGAGCTGCTG ATCGAGAACG GCGCGGTGCG CGTCGACGGC
GTGCCGGCGC TGCTGCCGCA GTCGCGCGTG CACGCTCACC AGAAAGTCGA GATCGAGCCC
GGCGCCAAGC CCGAGCCGGT GGTGCCCGTC ACCCTGCTGC TGCACAAGCC GGCCGGCATG
GCCACCGACA CCGCGCACCG GCTGCTGGTG GCCGCCAACC ATCACGAGCC CGAGCGCGCG
GGCATGCGCT TCCTGCCCGC GCACGCCAAG GCGCAGCGCT GCATGACGCC GCTCGAAACC
GGCGCCAGCG GCCTCGTCGT CTACACGCAG GAATGGCGCA TCGAGCGCAA GCTGCAGGAG
GACGCGGGCG TGCTCGAACA CGAGGTGATG GTCGACGTGT CCGGCAAGCT GAGCCCCGAG
CAGCTCGTGC GCTTCGAGCG GTCGCCCGCG CGCGTGAGCA TCGGCCGCCA GGCCGACGAG
CAGACCGGCC TGCGCTTTGC GCTCAAGGGC GCGCGGCCCG GGCAGATCGC GCACCTGTGC
GACGAAGCCG GCCTGCGCAT CCTGGCCATG CGGCGCATCC GCATCGGCCG CGTGCCGCTG
GCGGGGCTGG AGCCCGGCCA GTGGCGCTAT CTTTCGCCGC ACGAACGCTT TTGA
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| Protein sequence | MSRASEEEGI RLAKRVAAIA GCSRREAELL IENGAVRVDG VPALLPQSRV HAHQKVEIEP
GAKPEPVVPV TLLLHKPAGM ATDTAHRLLV AANHHEPERA GMRFLPAHAK AQRCMTPLET
GASGLVVYTQ EWRIERKLQE DAGVLEHEVM VDVSGKLSPE QLVRFERSPA RVSIGRQADE
QTGLRFALKG ARPGQIAHLC DEAGLRILAM RRIRIGRVPL AGLEPGQWRY LSPHERF
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