| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0871 |
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| Symbol | |
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| ID | 7972087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 958661 |
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| End bp | 959875 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791469 |
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| Product | drug resistance transporter, Bcr/CflA subfamily |
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| Protein accession | YP_002942790 |
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| Protein GI | 239813880 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGCTG CCGCACTTTC CTCCACGCCG CGCCGGCATG CGCCGCTGTG GCTGCTGGCG
CTCGTCACCT TCAGCGGCAC GCTCGCCATG CACATCTTCG TGCCCGCGCT GCCCGTTGCT
GCGCAGGGCC TGGGCGCCGG CATGGGCGCG ATGCAGATGA CCGTGAGCCT CTACATCCTC
GGCCTGGCCG TGGGGCAGCT CGCCTACGGC CCGCTGGCCG ACCGCTACGG CCGCCGCCCG
GTGCTGCTGT GCGGGCTTGC GCTCTATTCG GCCGCGGGGC TTGCTGCGGC GCTCGCACCC
GATGTCCATG CGCTCATCGC CGCGCGGCTG TTCCAGGCCA TGGGCGGCTG CGCGGGGCTG
GTGCTGGGGC GCAGCATGGT GCGCGACACC GCCGAGCCGC AGGAAGCCAC GAAGCGCCTC
GCGCTCATGA ACCTCATGGT CACGGTCGGC CCGAGCATTG CACCGCTGCT CGGCGGCGCG
CTGGCCAGCG CCTTCGGCTG GCGCTCGATC TTCCATGCAC TGTTCGCGCT CGGCCTCACG
GGTCTCTTGT TCGCATGGAG GCTGCTGCCC GAAACCGGCA CGCCGGGCAT GCGCGTCGAA
GGCCGGGTGT TGGCACGCAA CTACCGCTTG CTGCTCGCGT CGCCCGCGTT CCTCGGCTTT
TCGATCGGCG GCGGCTGCGC CACCACGTCG ATGTATGCCT TCATCGCGTC GGCACCCTTC
ATCTTCGTCG ACCAGCTGCA TCGCCCTGCG CACGAGGCCG GCATCTACCT TGCGATATTG
GTGTCGGGCG TGTGGCTTGG CAGCTTTCTC ACCAGCCGCC TGATCGTGCA CGCGAACCTC
GACCGGCTCA TGACGCGCGC CAACCTGCTG AGCTGCGCCG CGGCCTTCGT TCTGCTGGGC
GCAGCGCTCG CGCAGCGGCT GTCGGTGCCG CTCATCGTGG CGGCGATGTT CCTCTACACC
GTGGGCGCGG GCATGGCTTC GCCGGCCGCG CTCACGCGCG CCATCGGCGT CAATCCGCTC
GTGATCGGCT CGGCTTCAGG GCTCTATGGC GCCACGCAGA TGTCGGTGGG CGCCGCATGC
ACCGCGCTGG CGGGGCTGGG GCACCGCAAC CCCGCGATGG CGGCGGCGCT GGTGCTGGCC
GGTGCCAGCA TCGTGGCGCA GGCCTCATTC GCGGTGGCGC TGCGCGCGCA GAAGAGGGCG
GAGGCGGCTG CGTAG
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| Protein sequence | MAAAALSSTP RRHAPLWLLA LVTFSGTLAM HIFVPALPVA AQGLGAGMGA MQMTVSLYIL
GLAVGQLAYG PLADRYGRRP VLLCGLALYS AAGLAAALAP DVHALIAARL FQAMGGCAGL
VLGRSMVRDT AEPQEATKRL ALMNLMVTVG PSIAPLLGGA LASAFGWRSI FHALFALGLT
GLLFAWRLLP ETGTPGMRVE GRVLARNYRL LLASPAFLGF SIGGGCATTS MYAFIASAPF
IFVDQLHRPA HEAGIYLAIL VSGVWLGSFL TSRLIVHANL DRLMTRANLL SCAAAFVLLG
AALAQRLSVP LIVAAMFLYT VGAGMASPAA LTRAIGVNPL VIGSASGLYG ATQMSVGAAC
TALAGLGHRN PAMAAALVLA GASIVAQASF AVALRAQKRA EAAA
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