Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0870 |
Symbol | |
ID | 7972086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 957177 |
End bp | 958658 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 644791468 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002942789 |
Protein GI | 239813879 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCTGTC TTGCACTTCG CATGGCTTCG CTCGCGGTTG CGGCGGGGCT CGCGGCTTGC GCAGCCGTCG GCCCCGACTA CCGCCAGCCG CCCGAGGCGC TGGCCAGCCA GCCCGGCGCC GCGCGCCCGT TCGCCGAGGC GCCCGCCAAC GCCGCGCCGC TGCCCGCGCA CTGGTGGCGG CTGTACCACG ACCCGCTGCT GGACCGGCTC GTTGCGCAGG CCCTCGCGCA CAACACCGAC CTGCGGCAGG CGGTCGCGAA CCTGGAGCGC GAGCGCGCCA TCGAGGCCGA GGTTGCCGGC GGCCAGCGCC CCACGCTCGG CGTGAGCGGC GGCCCTTCGT TCGGCCATGC GTCGGGCCTG TCGATGCTGC AGAAGGGCTA TGAGCCGCCG AGCCGCTTCA ACTACAGCGC GGGTGCCTCC CTGTCCTACC AGGTCGACCT GTTCGGCCAG ATACGCCGCA GCATCGAAGC CGCGGGCGCC AACACCGAGG CCGCCGCGGC CGCGCTCGAC CTCGTGCGCG TGAACGTGGC CGCAGGCACC GCGCGCGCCT ACGCGCAGGC CTGCTCGACC GGACTGCGCC TGCAGATCGC GCAGAAATCC GTCGCGCTGC AACAGGACGC CCTGAACGTC ACCGAGCGCC TGCAGCGCGC GGGCCGTGCC GGTGCCATCG ACGCCAACCG CGCGCGTGCG CAGCTGGAGC AGCTGAATGC CGCGCTGCCG CCGCTGCAGG CCGAGCGCCA GGGCGCGCTC TACCGCCTGG CCACGCTGAC CGGCGCCCTG CCGCAGGACT TCCCGCGCGA AGTGGCCGGC TGCACCGTGC CCCCGCGCGT GGCCGGCACG CTGCCGGTGG GCGATGGCGC GGCCCTGCTG CGGCGCCGCC CGGACATCCG CCAGGCCGAG CGCAGCCTGG CGGCCTCCAC CGCACGCATC GGCGTGGCCA CGGCCGATCT CTATCCGAAG GTGACGCTGG GGCTCTCGGC CTCGTCGGCC GGGCCGGCCA GCGATTTCGG CCGCAAGGAC ACCATTGGCT GGAGCATGGG CCCGCTGATC TCCTGGACCC TCCCCAACAC CGGCATCGCG CAGGCCCGCA TCGCCCAGGC CGAGGCCGGC ACGCGCGCCG CGCTCGCGAA GTTCGACGGC ACCGTGCTGA CCGCATTGCG CGAAACCGAG ACCGCGCTCG GCACCTATGC GCGCGAGCTC GACCGCCGCG CCGCGCTGCA GGCTTCGCGC GACCAAAGCG CCAAGGTGGC CGCGCAGGCG CGCCAGCTCT ACCAGGGCGG CCGCACCGCG TACCTCGAGG CGCTCGATGC CGAACGCTCG CTGGCCGCGA GCGACGCGGC GCTCGCGGCC AGCGAGGCGC AATTGGCCGA CGACCAGGTG GTGCTGTTCA TGGCGCTCGG CGGCGGCTGG GAGCCGGACG ATGGCACCGG CCTCGCGGCC AACGAAGCCG CGCCCGCGTC CACCTCCGTC AAGGCCCGCT GA
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Protein sequence | MSCLALRMAS LAVAAGLAAC AAVGPDYRQP PEALASQPGA ARPFAEAPAN AAPLPAHWWR LYHDPLLDRL VAQALAHNTD LRQAVANLER ERAIEAEVAG GQRPTLGVSG GPSFGHASGL SMLQKGYEPP SRFNYSAGAS LSYQVDLFGQ IRRSIEAAGA NTEAAAAALD LVRVNVAAGT ARAYAQACST GLRLQIAQKS VALQQDALNV TERLQRAGRA GAIDANRARA QLEQLNAALP PLQAERQGAL YRLATLTGAL PQDFPREVAG CTVPPRVAGT LPVGDGAALL RRRPDIRQAE RSLAASTARI GVATADLYPK VTLGLSASSA GPASDFGRKD TIGWSMGPLI SWTLPNTGIA QARIAQAEAG TRAALAKFDG TVLTALRETE TALGTYAREL DRRAALQASR DQSAKVAAQA RQLYQGGRTA YLEALDAERS LAASDAALAA SEAQLADDQV VLFMALGGGW EPDDGTGLAA NEAAPASTSV KAR
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