Gene Vapar_0870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0870 
Symbol 
ID7972086 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp957177 
End bp958658 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content75% 
IMG OID644791468 
ProductRND efflux system, outer membrane lipoprotein, NodT family 
Protein accessionYP_002942789 
Protein GI239813879 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTGTC TTGCACTTCG CATGGCTTCG CTCGCGGTTG CGGCGGGGCT CGCGGCTTGC 
GCAGCCGTCG GCCCCGACTA CCGCCAGCCG CCCGAGGCGC TGGCCAGCCA GCCCGGCGCC
GCGCGCCCGT TCGCCGAGGC GCCCGCCAAC GCCGCGCCGC TGCCCGCGCA CTGGTGGCGG
CTGTACCACG ACCCGCTGCT GGACCGGCTC GTTGCGCAGG CCCTCGCGCA CAACACCGAC
CTGCGGCAGG CGGTCGCGAA CCTGGAGCGC GAGCGCGCCA TCGAGGCCGA GGTTGCCGGC
GGCCAGCGCC CCACGCTCGG CGTGAGCGGC GGCCCTTCGT TCGGCCATGC GTCGGGCCTG
TCGATGCTGC AGAAGGGCTA TGAGCCGCCG AGCCGCTTCA ACTACAGCGC GGGTGCCTCC
CTGTCCTACC AGGTCGACCT GTTCGGCCAG ATACGCCGCA GCATCGAAGC CGCGGGCGCC
AACACCGAGG CCGCCGCGGC CGCGCTCGAC CTCGTGCGCG TGAACGTGGC CGCAGGCACC
GCGCGCGCCT ACGCGCAGGC CTGCTCGACC GGACTGCGCC TGCAGATCGC GCAGAAATCC
GTCGCGCTGC AACAGGACGC CCTGAACGTC ACCGAGCGCC TGCAGCGCGC GGGCCGTGCC
GGTGCCATCG ACGCCAACCG CGCGCGTGCG CAGCTGGAGC AGCTGAATGC CGCGCTGCCG
CCGCTGCAGG CCGAGCGCCA GGGCGCGCTC TACCGCCTGG CCACGCTGAC CGGCGCCCTG
CCGCAGGACT TCCCGCGCGA AGTGGCCGGC TGCACCGTGC CCCCGCGCGT GGCCGGCACG
CTGCCGGTGG GCGATGGCGC GGCCCTGCTG CGGCGCCGCC CGGACATCCG CCAGGCCGAG
CGCAGCCTGG CGGCCTCCAC CGCACGCATC GGCGTGGCCA CGGCCGATCT CTATCCGAAG
GTGACGCTGG GGCTCTCGGC CTCGTCGGCC GGGCCGGCCA GCGATTTCGG CCGCAAGGAC
ACCATTGGCT GGAGCATGGG CCCGCTGATC TCCTGGACCC TCCCCAACAC CGGCATCGCG
CAGGCCCGCA TCGCCCAGGC CGAGGCCGGC ACGCGCGCCG CGCTCGCGAA GTTCGACGGC
ACCGTGCTGA CCGCATTGCG CGAAACCGAG ACCGCGCTCG GCACCTATGC GCGCGAGCTC
GACCGCCGCG CCGCGCTGCA GGCTTCGCGC GACCAAAGCG CCAAGGTGGC CGCGCAGGCG
CGCCAGCTCT ACCAGGGCGG CCGCACCGCG TACCTCGAGG CGCTCGATGC CGAACGCTCG
CTGGCCGCGA GCGACGCGGC GCTCGCGGCC AGCGAGGCGC AATTGGCCGA CGACCAGGTG
GTGCTGTTCA TGGCGCTCGG CGGCGGCTGG GAGCCGGACG ATGGCACCGG CCTCGCGGCC
AACGAAGCCG CGCCCGCGTC CACCTCCGTC AAGGCCCGCT GA
 
Protein sequence
MSCLALRMAS LAVAAGLAAC AAVGPDYRQP PEALASQPGA ARPFAEAPAN AAPLPAHWWR 
LYHDPLLDRL VAQALAHNTD LRQAVANLER ERAIEAEVAG GQRPTLGVSG GPSFGHASGL
SMLQKGYEPP SRFNYSAGAS LSYQVDLFGQ IRRSIEAAGA NTEAAAAALD LVRVNVAAGT
ARAYAQACST GLRLQIAQKS VALQQDALNV TERLQRAGRA GAIDANRARA QLEQLNAALP
PLQAERQGAL YRLATLTGAL PQDFPREVAG CTVPPRVAGT LPVGDGAALL RRRPDIRQAE
RSLAASTARI GVATADLYPK VTLGLSASSA GPASDFGRKD TIGWSMGPLI SWTLPNTGIA
QARIAQAEAG TRAALAKFDG TVLTALRETE TALGTYAREL DRRAALQASR DQSAKVAAQA
RQLYQGGRTA YLEALDAERS LAASDAALAA SEAQLADDQV VLFMALGGGW EPDDGTGLAA
NEAAPASTSV KAR