| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0869 |
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| Symbol | |
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| ID | 7972085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 956236 |
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| End bp | 957171 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791467 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002942788 |
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| Protein GI | 239813878 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCCC CTTCTTCCAC CGACAGCGCC TGGCCGATAC GCCTCGGGCG CATTCTTCTC
ACCGCGGCCG TGGTGGCGGC CGCCGCATGG GCCGGCTTGC AGCTCTGGGA CCACTACGAG
CTCGCCCCCT GGACGCGCGA CGGCCGCGTG CGCGCCAACG TGGTCCAGAT CGCGCCGGAC
GTTTCCGGCC TGGTCACCGC GGTGCCTGTG CGGGACAACC AGGCCGTGCA GGCCGGGGCC
CTGCTGTTCG AGGTGGACCG CGCGCGCTAC GACCTTGCCG TGCGCCAGGC CCAGGCCGCG
CTGGCGGCGC AGCGTGCCGC GAGCGCGCAG GCGCAGCGCG AGAACGCGCG CAACACGGGG
CTGGACGCGC TGGTGTCGCA GGAGGCCCGT GAACAGACCC GCGCCCGCGC GGAGCAGGCG
CGCGCCGCCG TCGCGCAGGC CGAGGTGGCG CTCGATGCGG CGCGCCTCAA CCTGCAGCGC
GCCGAGGTGC GCGCGCCGGC CGACGGCCTG GTGACCAATC TCGACCTGCG CACCGGCAGC
TATGCATCGG CCGGGCGTCC GGTGCTGGCG CTGGTCGATG CGCATTCGTT CTTCGTCGAG
GGCTACTTCG AGGAAACCAA GCTGCCGCGC ATCCACCTGG GCGACCGCGT GCGCGTGACG
CCAATGGGCG GCGGCGCGGT GCTCGAAGGC GCGGTCGACA GCGTGGCCGC CGGCATTGCC
GACCATGACC GCTCGACCAG CGCCAACCTG CTGCCCAGCG TGAACCCGAC CTTCAACTGG
GTGCGGCTCG CGCAGCGCAT TCCGGTGCGC ATCAGGCTCG ATCCGCTGCC GCAGGGCGCA
CGGCTCGTGG CCGGCCAGAC CGTGACCGTG CAGGTGCTCG AGCATCCGCC GGCGCGCAAC
GCCGGTGCAC CGGCCGCCGA GCCGAAGAAG GGATGA
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| Protein sequence | MKAPSSTDSA WPIRLGRILL TAAVVAAAAW AGLQLWDHYE LAPWTRDGRV RANVVQIAPD
VSGLVTAVPV RDNQAVQAGA LLFEVDRARY DLAVRQAQAA LAAQRAASAQ AQRENARNTG
LDALVSQEAR EQTRARAEQA RAAVAQAEVA LDAARLNLQR AEVRAPADGL VTNLDLRTGS
YASAGRPVLA LVDAHSFFVE GYFEETKLPR IHLGDRVRVT PMGGGAVLEG AVDSVAAGIA
DHDRSTSANL LPSVNPTFNW VRLAQRIPVR IRLDPLPQGA RLVAGQTVTV QVLEHPPARN
AGAPAAEPKK G
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