| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0844 |
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| Symbol | |
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| ID | 7972059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 930415 |
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| End bp | 932550 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791442 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
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| Protein accession | YP_002942763 |
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| Protein GI | 239813853 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACCA CAACCTCCAG CCCTTCCACG TCTTCCGGTC CCGTCAGCTT CGAGCGTCTT
GGCGACGTGT TCGTGGTGAC CATCGACAAT CCGCCCGTCA ACGCCCTGGG CGTGGATGTG
CGCCGCGGCC TCGTGGCCGC CATCGAGGCG GCCGAGGCCG ACAGCGCCGC CGCCGCGGTG
CTGATCGTCG GTGCGGGCCG CAACTTCATT GCGGGCGCCG ACATCCGCGA ATTCGGCAAG
ACGCCGCAAC CGCCCTCGCT GCCCGAGGTG TGCCTTGCTA TCGAGAACTG CGGCAAGCCG
GTGGTCGCCG CCATCCACGG CGCCGCGCTC GGCGGCGGGC TCGAAGTGGC GCTGTCGGCG
CACTACCGCC TGGCCGCACC GTCGGCCAAG CTGGGCCTGC CCGAAGTGCA GCTCGGCCTG
TTGCCCGGCT CGGGCGGCAC GCAGCGCGCA CCGCGCCTGA TCGGCGTGAA GCCCGCACTC
GAACTGGTGC TCAGCGGCCG CCACGCGGGC GCGAAGGAAG CGCTGTCGCT CGGCCTCGTG
GACCGGCTCG GCAACGAGGC CGATGCGCGC GCCGAAGGCC TGGCCTACGC GCAGGAACTC
GTGGCCGCCA AGGCGCCGGT GCGCCGCACG CGCGAGGCTG GCGGCCTGGC CGACAAGGAA
GCCAGCCGCG CCGCGCTCGA AGCCGCGCGC GCCGACACCG CCAGGAAGAG CCGCGGCCTG
TTCTCGCCGA TGAAGATCAT CGAAGCCGTC GAGGCCGCGC TCACGCTGCC TTTCGACGAA
GGCATGGCGC TGGAGCGCAA GCTGTTCCTG CAGTGCATCG ACAGCCCGCA GCGCGCCGGC
CTGATCCATG CTTTCTTCGC CGAGCGCGAA GTGCTGAAGG CGCCCGAGAC CCGGTCCGCC
GCGCCGCGCG CGCTTGCATC GGCCGGCATC GTCGGCGGCG GCACCATGGG CGCGGGCATC
GCGGTGGCGA TGCTCGACGC GGGCCTGCCC GTGACCATGA TCGAGCGCGA CGAGCCCAGC
CTCGCGCGCG GCCGCCAGCA TGTCGAGAAG GTGTACGACG GCCTCATCAA GAAGGGCCGC
ATGACGCCCG AGGCCAAGAC CGCCGTGATG GCGCGCTTCT CGGGCTCCAC GTCTTATGAC
GCGCTCGCGC AGGTCGACAT CGTGGTCGAA GCGGTGTTCG AGGACATGGG CGTGAAGAAG
GCCGTGTTCG CCGAGCTCGA CCGCGTGTGC AAGCGCGGCG CGGTGCTCGC CACCAACACC
TCGTACCTGG ACATCGATGA GATCGCCGAG AGCATCTCGC GTCCGCAGGA CGTGGTGGGC
CTGCACTTCT TCTCGCCGGC CAACATCATG AAGCTGCTGG AGATCGTGGT GCCCGCCAAG
GTCAGCGCCG ACGTGGTCGC GACCGGCTTC GAGCTTGCGA AGAAATTGAA GAAGGTGCCG
GTGCGCGCGG GCGTGTGCGA CGGCTTCATC GGCAACCGCA TCCTCGCGGT GTACCGCCAG
GCCGCCGACC ACATGATGGA AGACGGCGCA TCGCCCTACC AGATCGACGA GGCCGTGCGC
AACTTCGGCT ACCCGATGGG GCCGTTCCAG GTGTCGGACC TCGCGGGCGG CGACATCGGC
TGGGCCACGC GCAAGCGCAA GGCCGCCACG CGCGATCCGC AGGCGCGCTA CGTGCAGATT
GCCGACCGCA TCTGCGAGCG CGGCTGGTTC GGCCAGAAGA CGCAGCGCGG CTACTACCTG
TACCCCGAGG GCGCGCGCAC TGGCCAGCCC GACCCCGAGG TGCTGGCCAT CATCGACGCC
GAGCGCGAGC GCGCAGGCAT CACGCCGCGC ACCTTCACCG AGGAAGAAAT CATGCGCCGC
TACATGGCCG CGATGATCAA CGAGGGCGCC AACGTCGTGC TCCAGCGCAT CGCGCTGCGT
CCGCTCGACG TGGACGTGAC CTTTCTCTAT GGCTACGGCT TTCCGCGGCA TCGCGGCGGC
CCGATGAAGT ACGCCGACAC CGTGGGCCTG CCGAAGGTGC TGGCCGACAT CCGCGAGTTC
GCGAAAGAGG ACCCGATCTT CTGGAAGCCC TCGCCGCTGC TGGTGGAACT GGCCGAGCGT
GGTGCCGATT TCGCGAGCCT GAACCAATCC GAGTAA
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| Protein sequence | MATTTSSPST SSGPVSFERL GDVFVVTIDN PPVNALGVDV RRGLVAAIEA AEADSAAAAV
LIVGAGRNFI AGADIREFGK TPQPPSLPEV CLAIENCGKP VVAAIHGAAL GGGLEVALSA
HYRLAAPSAK LGLPEVQLGL LPGSGGTQRA PRLIGVKPAL ELVLSGRHAG AKEALSLGLV
DRLGNEADAR AEGLAYAQEL VAAKAPVRRT REAGGLADKE ASRAALEAAR ADTARKSRGL
FSPMKIIEAV EAALTLPFDE GMALERKLFL QCIDSPQRAG LIHAFFAERE VLKAPETRSA
APRALASAGI VGGGTMGAGI AVAMLDAGLP VTMIERDEPS LARGRQHVEK VYDGLIKKGR
MTPEAKTAVM ARFSGSTSYD ALAQVDIVVE AVFEDMGVKK AVFAELDRVC KRGAVLATNT
SYLDIDEIAE SISRPQDVVG LHFFSPANIM KLLEIVVPAK VSADVVATGF ELAKKLKKVP
VRAGVCDGFI GNRILAVYRQ AADHMMEDGA SPYQIDEAVR NFGYPMGPFQ VSDLAGGDIG
WATRKRKAAT RDPQARYVQI ADRICERGWF GQKTQRGYYL YPEGARTGQP DPEVLAIIDA
ERERAGITPR TFTEEEIMRR YMAAMINEGA NVVLQRIALR PLDVDVTFLY GYGFPRHRGG
PMKYADTVGL PKVLADIREF AKEDPIFWKP SPLLVELAER GADFASLNQS E
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