| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0843 |
|---|
| Symbol | |
|---|
| ID | 7972058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 929195 |
|---|
| End bp | 930385 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791441 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_002942762 |
|---|
| Protein GI | 239813852 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.777986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAAG CCGTCATCGT TTCCACCGCC CGCACCCCGC TCACCAAGGC GCACCGCGGC
GAATTCAACA TCACGCCGGG CCCCACGCTC GCGGCCTTTG CGGTCAAGGC CGCGGTCGAG
CGCTCGGGGC TGGACCCCGC GCTGATCGAG GACGCGATCC TCGGCTGCGG CTACCCCGAG
GGCACCACGG GCCGCAACAT CGCGCGCCAG TCGATCATCC GCGCGGGCCT GCCGATCAGC
ATCGCCGGCA CCACGGTCAA CCGCTTCTGC GCCTCGGGCC TGCAGGCGAT CGCGATGGCC
GCGGGTCGCA TCGTGGTGGA CGGCGCGCCG GCCATGATCG CGGGCGGCGT CGAAAGCATC
TCGCAGATCC GCGGACGCAG CCCCGGCGAC GGTGGCGACC TCAGCCTGGA CCCGTGGATC
GTCGAGCACA AGCCCGCGCT CTACATGGCG ATGATCGAGA CCGCCGACAT CGTGGCCCAG
CGCTACGGCA TCAGCCGCGA GGCGCAGGAC CGCTTCTCGG CCGAGAGCCA GCGCAAGACC
GAAGAAGCGC AGCTCGCCGG CCGCTACAAC GACGAGATCG TCGCCTGCAC CACCACCATG
GCCGTGACCG ACAAGGAGAC CAAGGAAGTC AGCTACCGCG AAGTCACCGC CACCGAGGAC
AACTGCAACC GCCGCGGCAC CACCTACGAG GCGCTCGCCA AGCTGAAGCC CGTGATGGGC
GACGACAAGT TCATCACCGC CGGCAACGCC TCGCAGCTGT CCGACGGCGC CTCGGCCTGC
GTGCTGATGG AAGCGAAGGA CGCGGAGCGT GCCAACCTCA AGCCGCTCGG CGCATTCCGC
GGCCTTGCGG TGGCCGGCTG CGAACCCGAC GAGATGGGCA TCGGCCCGGT GTTCGCGGTG
CCCAAGCTGC TCGCGCGGCA TGGCCTGAAG GTCGAGGACA TTGGCCTCTG GGAACTCAAC
GAAGCCTTTG CCTCGCAGTC GATCTACTGC CAGGAGAAGC TGGGCATTCC GTCGGAACTG
CTCAACGTGA ACGGTGGCGC GATCTCCATC GGCCATCCCT TCGGCATGAC CGGCGCGCGC
CTCACGGGCC ACGTACTCAT CGAAGGCAAG CGCCGCGGCG CGAAGTACGC GGTGGTCACG
ATGTGCATTG CCGGCGGCAT GGGCGCGGCG GGCCTGTTCG AAATATTTTG A
|
|---|
| Protein sequence | MREAVIVSTA RTPLTKAHRG EFNITPGPTL AAFAVKAAVE RSGLDPALIE DAILGCGYPE
GTTGRNIARQ SIIRAGLPIS IAGTTVNRFC ASGLQAIAMA AGRIVVDGAP AMIAGGVESI
SQIRGRSPGD GGDLSLDPWI VEHKPALYMA MIETADIVAQ RYGISREAQD RFSAESQRKT
EEAQLAGRYN DEIVACTTTM AVTDKETKEV SYREVTATED NCNRRGTTYE ALAKLKPVMG
DDKFITAGNA SQLSDGASAC VLMEAKDAER ANLKPLGAFR GLAVAGCEPD EMGIGPVFAV
PKLLARHGLK VEDIGLWELN EAFASQSIYC QEKLGIPSEL LNVNGGAISI GHPFGMTGAR
LTGHVLIEGK RRGAKYAVVT MCIAGGMGAA GLFEIF
|
|---|
| |