Gene Vapar_0835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0835 
Symbol 
ID7972050 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp919858 
End bp920442 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content67% 
IMG OID644791433 
ProductTripartite ATP-independent periplasmic transporter DctQ component 
Protein accessionYP_002942754 
Protein GI239813844 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0736967 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACTC CCAACGAGTC CGGCCCGCTG CTGGACGCCG CCAGCCCCCT TCCCCCAGAC 
ATCGAAGCCG CCGACGAGCC CACCCGGGTG CCGCTCGCCA TCGAGGACTG GCTCACCGTC 
ATCATCATGG GCGCGCTGGC GCTCATCACC TTTGCGAACG TGTTGGTGCG CTACTTCACC 
GATTCCTCGT TCGCGTGGAC CGAAGAGTTC TCGGTCTTCC TGATGATCAT GCTGGCGCTG 
GTGGCCGGCT CTGCCGCGGT GGCGCGCGAC CGCCACATCC GCATCGAGTA TTTTTCCGAA 
AGCGGCTCCA TGGCGCGGCG CAAGCGCCTC GCGCAGTTCG GCGCGCTGAT GATCGCCATC 
CTGTTCGCGC TGATCGGCGC GCTCAGCATC CGCATGGTGT GGGACGACTA CCGCTTCGAC 
GAGACCACGC CGGGCATCGG CCTGCCGGCG TGGTGGTATT CGATCTGGCT GCCGATCGTG 
TCGTTCGCCA TCGCGCTGCG CGCGGTGGGC CTCATGATCC GCCGCGGCCG CAAGGAATAC 
CGCAGCGACA CCAAGACCCC CGGCGGCAAG GGCAACGCAT CGTGA
 
Protein sequence
MTTPNESGPL LDAASPLPPD IEAADEPTRV PLAIEDWLTV IIMGALALIT FANVLVRYFT 
DSSFAWTEEF SVFLMIMLAL VAGSAAVARD RHIRIEYFSE SGSMARRKRL AQFGALMIAI 
LFALIGALSI RMVWDDYRFD ETTPGIGLPA WWYSIWLPIV SFAIALRAVG LMIRRGRKEY 
RSDTKTPGGK GNAS