| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0834 |
|---|
| Symbol | |
|---|
| ID | 7972049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 918563 |
|---|
| End bp | 919861 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791432 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_002942753 |
|---|
| Protein GI | 239813843 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.23055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCCCA CCCTGCTCTT CGTCGCCTTC GTCGCGATGA TGCTGGTGGG CGTGCCCATC
GGCGCCGCGC TCGGCCTGGC CGGCGCCGCC TGCATCGCGT TGGCCAACAG CGACGCCCAG
TGGTTCGGCC TGCTGGCCGT GCCGCAGAAC TTCTATGCCG GCCTCGGCAA GTACCCGCTG
CTGGCCATCC CGATGTTCGT GCTGGTGGGC TCCATCTTCG ACCGCTCGGG CGTGGCGCTG
CGGCTCGTGA ACTTTGCGGT GGCGATCGTC GGGCGCGGGC CCGGCATGCT GCCGCTGGTG
GCCATTGCGG TGGCGATGTT CCTCGGCGGC ATCTCGGGCT CGGGCCCGGC CAATGCCGCT
GCCGTGGGCG CGGTGATGAT CGCGGCCATG TCGCGCGCGG GCTACCCGGC CGCCTTCTCG
GCCAGCGTGG TGGGCGCCGC AGCGGCCACC GACATCCTGA TTCCGCCCTC GGTCGCGTTC
ATCGTCTACT CGGTGCTGGT GCCCGGCGCC TCGGTGCCGG CGCTCTTTGC AGCCGGCATG
ATCCCGGGCG TGATGGCCGG CCTGGCGCTG ATGATCCCGG CCGTGCTGCT GGCCCGCCAG
CACAAGATGG GCGCGCTCGA AGCGACGCTG CCGCGCCCGC CGTTCTGGAA GAGCTTTCGC
GAAGCGGTCT GGGGCCTGGC GGCGCCGGTG CTGATCCTGG GCGGCATGCG CGCGGGCTGG
TTCACGCCCA CCGAGGCCGC GGTGGTGGCG GTGTTCTACG GCCTTTTCGT GGGCATGTGC
GTGCACCGGA CCATCAAGGT GCGCGACCTG TTCGTCATCT TGCGCGAATC GGGCGAGCTC
TCGGCGGTGA TTTTGCTGGT GGTGTCGCTC GCGGGCATCT TCGCGTACTC GCTTTCCACG
CTGGGCATCA TCGACCCGGT GACGCGCGCC ATCGTGAATT CGGGCCTCGG CGAATACGGC
ATCCTGGCGC TCCTGATCCT GCTGCTCATC ACGGTGGGCA TGTTCCTGGA CGGCGTGTCG
ATCTTCCTGA TCTTCGTGCC GCTCCTGCTG CCGATCGTGC AGTACTACAA ATGGGATCCG
GTGTGGTTCG GCGTGATCCT CACGCTCAAG GTCGCATTGG GCCAGTTCAC GCCGCCGCTC
GCGGTCAACC TGATGGTGTC GTGCCGCATC GCCAAGGTTC GCATGGAAGA AACCGTGCGC
TGGGTCGGCT GGATGCTGTT CTCGATGTTC GTGGTGATGG TGCTGGTGAT CGTGTTTCCT
GAGCTTGCGC TCTGGTTGCC GCGCAAGCTG GGGTATTGA
|
|---|
| Protein sequence | MIPTLLFVAF VAMMLVGVPI GAALGLAGAA CIALANSDAQ WFGLLAVPQN FYAGLGKYPL
LAIPMFVLVG SIFDRSGVAL RLVNFAVAIV GRGPGMLPLV AIAVAMFLGG ISGSGPANAA
AVGAVMIAAM SRAGYPAAFS ASVVGAAAAT DILIPPSVAF IVYSVLVPGA SVPALFAAGM
IPGVMAGLAL MIPAVLLARQ HKMGALEATL PRPPFWKSFR EAVWGLAAPV LILGGMRAGW
FTPTEAAVVA VFYGLFVGMC VHRTIKVRDL FVILRESGEL SAVILLVVSL AGIFAYSLST
LGIIDPVTRA IVNSGLGEYG ILALLILLLI TVGMFLDGVS IFLIFVPLLL PIVQYYKWDP
VWFGVILTLK VALGQFTPPL AVNLMVSCRI AKVRMEETVR WVGWMLFSMF VVMVLVIVFP
ELALWLPRKL GY
|
|---|
| |