| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0830 |
|---|
| Symbol | |
|---|
| ID | 7972045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 914622 |
|---|
| End bp | 915311 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644791428 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_002942749 |
|---|
| Protein GI | 239813839 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATC TCGACCTGTC GTTCTACAAC TGGGACGTCA TCAGCAACTT CGTCGTCAAG
GGCTTCTACT TCAGCATCAT GCTGACGATC GTCGCCACCA TTGGCGGCGT GCTCTTCGGC
ACCGTGCTGG CGCTGATGCG GCTGTCGGGC AAGAGGTGGC TCGACGCGCC GGCCGCCATC
TACGTCAACG GCATGCGCAG CATTCCGCTG GTGATGGTGA TCCTGTGGTT CTTCCTCCTG
GTGCCGGCCT CGTTCTACGC GGCCTTCGGC TCCATCGGCT CGAACTACCG CTCGGAAATC
TCGGCCGTGA TCACCTTCAT CGCGTTCGAG GCGGCCTACT TCAGCGAGAT CATGCGCGCG
GGCATCCAGT CGATTCCGCG CGGCCAGGTG AATGCGGGCC AGGCGGTCGG CATGACGTAC
GGCCAGAACA TGCGCCTCGT GGTGCTGCCG CAGGCCTTCC GCAACATGTT GCCGGTGCTG
CTCACGCAGA CCATCATCCT GTTCCAGGAC ACCTCGCTGG TCTACGCCAT CGGCGCCTAC
GACATGCTCA AGGGCTTCGA GACCGCGGGC AAGAACTTCG GCCGCCCGAT CGAGGCCTAC
CTGCTCGCGG CCGTGGTTTA CTTCATCATG TGCTATGCCT TGTCGTGGCT CGTCAAGCGC
CTCCACAAGA AGATCGCCAT CATTCGCTAG
|
|---|
| Protein sequence | MMNLDLSFYN WDVISNFVVK GFYFSIMLTI VATIGGVLFG TVLALMRLSG KRWLDAPAAI
YVNGMRSIPL VMVILWFFLL VPASFYAAFG SIGSNYRSEI SAVITFIAFE AAYFSEIMRA
GIQSIPRGQV NAGQAVGMTY GQNMRLVVLP QAFRNMLPVL LTQTIILFQD TSLVYAIGAY
DMLKGFETAG KNFGRPIEAY LLAAVVYFIM CYALSWLVKR LHKKIAIIR
|
|---|
| |