| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0828 |
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| Symbol | |
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| ID | 7972043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 912859 |
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| End bp | 913761 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644791426 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002942747 |
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| Protein GI | 239813837 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGC AAGTATTGGC ATTGGCAATC GCAGCCCTGG CTGCCGGCAG CGCTTTTGCC
CAGGCCAATG ACACCCTGGC CAAGATCAAG GCCTCGGGCA GCATCACCGA AGGCGTGCGG
GAATCTTCCG GCCTGTCGTA CACGCTGGGC AACGGCCAGT ACACCGGCTT CCACTACGAC
ATCTGCGCCA ACATCATCAA GGACATCCAG AAGCACCTGG GCCTTGCCAA GCTGGAAACC
AAGTACCAGC CCGTCACCTC GCAGAACCGC GTGCCTCTGG TGCAGAACGG CACCGTCGAC
CTGGAGTGCG GCTCCACCAC CAACAACGCC ACGCGCCAGA AGGATGTTTC CTTTGCCGTG
ACCACCTACG TGGAAGAAGT GCGCATCGCG GTCAAGGCCA ACTCGGGCAT CAACAGCATC
AAGGACCTCA ACGGCAAGAC CGTGGCCACC ACCACCGGCA CCACCTCGGT GCAGACCCTG
CGCAAGAACG AGCGCGCCGG CGGCATCGAC TTCAAGGAGC TCTATGGCAA GGACCACTCC
GACAGCTTCC TGCTGCTCGA ATCGGGCCGC GCCGACGCCT TCGTGATGGA CGGCTCCATC
CTGGCCTCGA ACATCGCCAA GTCGAAGTCG CCCGCCGACT TCAAGATCGT CGGCGAAGTG
CTCAGCGTCG AGCCCATCGC CATCATGATC CGCAAGGACG ACCCCGCCTT CAAGAAGGTG
GTGGACGACA GCATCAAGGC ACAGATCAAG AACGGCGACC TCGCCAAGCT CTGGGACAAG
TGGTTCCTGA AGCCGATCCC GCCGGCCAAC GTCACGGTGA ACCTGCCGCT GTCCGACGCC
ACGAAGGCCG CCTGGGCCAA CCCGAACGAC AAGCCGATGG AAGACTACGC GGCCAAGAAG
TAA
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| Protein sequence | MNKQVLALAI AALAAGSAFA QANDTLAKIK ASGSITEGVR ESSGLSYTLG NGQYTGFHYD
ICANIIKDIQ KHLGLAKLET KYQPVTSQNR VPLVQNGTVD LECGSTTNNA TRQKDVSFAV
TTYVEEVRIA VKANSGINSI KDLNGKTVAT TTGTTSVQTL RKNERAGGID FKELYGKDHS
DSFLLLESGR ADAFVMDGSI LASNIAKSKS PADFKIVGEV LSVEPIAIMI RKDDPAFKKV
VDDSIKAQIK NGDLAKLWDK WFLKPIPPAN VTVNLPLSDA TKAAWANPND KPMEDYAAKK
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