| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0819 |
|---|
| Symbol | |
|---|
| ID | 7972034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 902390 |
|---|
| End bp | 902983 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791417 |
|---|
| Product | DSBA oxidoreductase |
|---|
| Protein accession | YP_002942738 |
|---|
| Protein GI | 239813828 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3917] 2-hydroxychromene-2-carboxylate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAGA CAGTCGAGTT CTATTTCGAC TTCGGCAGCC CCGCCGCCTA CCTCGCCGCC
ACGCAGCTGC CGCACGTCTG CGCCGACACC GGCGCCGAGT TGGTGTGGAA GCCCATGCTG
CTGGGCGGCG TGTTCCAGGC CACCGGCAAC CGGTCGCCGG CCGAGGTCGT GCCCAAGGCG
CCGTACATGA CCATCGACCT GCAGCGCTTT GCCAAACGCT ACGGCGTGCC CTTCGTGCAC
AACCCGCACT TTCCCATCAA CACGCTGCTG CTGATGCGCG GCGCGACCGG CCTCCAGATG
AAGGAGCCGG CACGCTTTGG CGCATACGTC GGTGCCGTCT TCCACGCGAT GTGGGTCGAG
CCGAAGAACA TGAACGACCC CGCCACCGTC GGCGCCGTGC TTCAAAATGC GGGCTTCGAC
GCCACCGCCT TGCTCGCGCT GGCCGGCACG CAGGAAGTGA AGGACCGCCT GAAGGCCGTC
ACGCAGGAAG CGGTGGCGCG CGGCGTGTTC GGCGCCCCCA CCATGTTCGT CGGCGACCAG
ATGTTCTGGG GCCAGGACCG CCTCGATTTC GTACGCGAAG CCCTCGACGC CTGA
|
|---|
| Protein sequence | MTKTVEFYFD FGSPAAYLAA TQLPHVCADT GAELVWKPML LGGVFQATGN RSPAEVVPKA
PYMTIDLQRF AKRYGVPFVH NPHFPINTLL LMRGATGLQM KEPARFGAYV GAVFHAMWVE
PKNMNDPATV GAVLQNAGFD ATALLALAGT QEVKDRLKAV TQEAVARGVF GAPTMFVGDQ
MFWGQDRLDF VREALDA
|
|---|
| |