| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0812 |
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| Symbol | |
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| ID | 7969578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 895491 |
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| End bp | 897914 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791410 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
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| Protein accession | YP_002942731 |
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| Protein GI | 239813821 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.421844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCGAT TCCAAGTGAA GAAAGTCGCC GTGCTCGGCG CCGGCGTGAT GGGCGCGCAG
ATTGCGGCCC ACCTCGTCAA TGTGCGCGTG CCTGTGGTGC TGTTCGACCT GGCCGCGAAG
GACGCGACCG GAGCTGTCGC TCAAGGTGCA GCGAAGAACG GCATCGTCTC GCGCGCCATC
GAGAACCTCA AGAAGCTCAA GCCCGCGCCG CTCGGCGACG TGGCCGATGT GGTGCTCATC
GAGCAGGCCA ACTATGAGGA CGACCTCGCC AAGCTCGGCG AGTGCGATCT CGTCATCGAA
GCCATTGCCG AGCGCATGGA CTGGAAGCTC GACCTGTACA AGAAGATCGC GCCGCACGTC
GCCAAGCATT CGATCCTGGC CTCGAACACC TCGGGCCTGT CGATCACCAA GCTCAGCGAG
GCGCTGCCTG AAGCGCTGAA GCCGCGCTTC TGCGGCATTC ACTTCTTCAA CCCGCCGCGC
TACATGTTCC TGGTGGAGCT GATCAACACG CCCACCACCG AGCCGCAGGT GCTCGACGAC
CTCGAGGCCT TCGTCACCAG CACGCTCGGC AAGGGCGTGG TGCGCGCGCA CGACACGCCC
AACTTCATTG CCAATCGCGT CGGCATCGCC GGCATGCTGG CGACGCTGAA GGAAGTCGAG
AAGTTCGGCC TCACGCCCGA CGTGGTGGAC GATCTCACGG GCAAGAAGCT GGGCCGCGCG
AGCTCGGGCA CCTTCCGCAC GGCCGACGTG GTGGGCCTGG ACACCATGGC CCATGTCGTG
AAGACGCTGC AGGACAACCT GAACGCAGAG ACTGATCCGT TCTATGCCAA CTTTTCGACG
CCGCCGGTGC TTGCCAAGCT GCTCGAACTC GGCAACCTGG GCCAGAAGAC CAAGGCCGGC
TTTTTCAAGA AGGTCGGCCG CGACATCCTG CGCTTCGACC TGCAGAGCGG CGAGTACGTG
CCCGCCGGCG CGAAGGCCGA CGAGGTGTAC GGCCGCATGC TCAAGAAACC CGCGGGCGAA
CGCCTGAAGC TCTTGCGCGA AAGCGAAGGG CCGCAGGGGC AGTTCCTCTG GGCCATCCTG
CGCGACGGGT TCCACTACGC CGCGGTGCAC CTGGCCGACA TCGCCGAGAG CGCGCGCGAC
ATCGACTTTG CGATGCGCTG GGGCTTCGGC ATGAAGCAGG GGCCGTTCGA GCTCTGGCAG
GAAGCCGGCT GGGCGCAAGT CGCGAAGTGG GTGCAGGAAG ACATCGACGC CGGCAAGGCG
CTGAGCAGCG CACCGCTGCC CCAGTGGGTG TTCGAAGGCC CGGTTGCGCA GGCCGGCGGC
GTGCACACGC CCGAAGGCTC GTGGAGCGCC TCGCAGAACA CCTTCGTGCC GCAGCGCAGG
CTGCCGGTGC ATGACCGCCA GCTGTTCCCC GAAAGCGTGC TCGGCGCGAG CGCGGCCGAC
GCGAACACCG CGGGCACGAC GATCAGCGAC GAAGGCGATG TGCGCGTGTG GACGCTCGAC
GGCGAAGTGC TGATTGCCAG CATCCATTCG AAGATGCACG CCATCAGCCC CGACGTGGCC
GAGGCGCTGG GCGCCGCGGT CGAGCTCGCA GAGGCTGAAT ACAAGGGCCT GGTGATCTGG
TCGCCCGACG AGGTGTTCTC GGTCGGCGCC GACCTGCAGG CGATGCTGCC GGCCTTCGTG
GTCGCGGGCA TCGGCGCGGT CGAAGGCGCG GAAGAAGAGC TGCAGAACGT GATGCTCAAG
ATCCGCTACG CGAGCGTGCC GGTGGTCTCG GCCGTGCGCG GCATGGCGCT GGGCGGCGGC
TGCGAGCTGG CCGTGTATTC GTCGAAGCGC GTGGCGGCGA TGGAGAGCTA CATCGGCCTG
GTCGAAGTGG GCGTGGGCCT GATCCCCGGC GCGGGCGGCC TGACCTACAT TGCGCGCCGC
GCGGCCGAGA ACGCATCGGC CTCCACAGGC ACCGACCTGC TGCCGTTCCT GACCGAAGGC
TTCACGGCCG CCGCGATGGC CAAGGTGGGC ACCGGCGCGC TCGATTCGAA GAAGCTCGGC
TACCTGCTGG ACAGCGACAT CATCGTGCCG AACAAGGACG AGCTGCTCTA CGTGGCGCTG
CAGCAGGCCA GGGCCATGGC CGACGCCGGC TACCGCGCAC CGCTGCGCCG CAGCTTCCGC
GTGGCGGGCC GCAGCGGCGC CGCGACCATC AAGGGCCAGC TCGTGAACAT GCGCGACGGC
GGCTTCATCA GCGCGCACGA TTTCCACATC GCGAGCCTGA TCGCGCACGT GGTGACCGGC
GGCGACGTGG ACGCAGGCTC GCTCGTGACC GAGGAATACC TGATGGCGCT GGAACGCAAG
GCGTTCTGCT CGCTGATCGT GCACCCGAAG ACGCAGGAGC GGATCATGGG GATGCTGAGC
ACGGGGAAGC CGGTGCGGAA CTGA
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| Protein sequence | MSRFQVKKVA VLGAGVMGAQ IAAHLVNVRV PVVLFDLAAK DATGAVAQGA AKNGIVSRAI
ENLKKLKPAP LGDVADVVLI EQANYEDDLA KLGECDLVIE AIAERMDWKL DLYKKIAPHV
AKHSILASNT SGLSITKLSE ALPEALKPRF CGIHFFNPPR YMFLVELINT PTTEPQVLDD
LEAFVTSTLG KGVVRAHDTP NFIANRVGIA GMLATLKEVE KFGLTPDVVD DLTGKKLGRA
SSGTFRTADV VGLDTMAHVV KTLQDNLNAE TDPFYANFST PPVLAKLLEL GNLGQKTKAG
FFKKVGRDIL RFDLQSGEYV PAGAKADEVY GRMLKKPAGE RLKLLRESEG PQGQFLWAIL
RDGFHYAAVH LADIAESARD IDFAMRWGFG MKQGPFELWQ EAGWAQVAKW VQEDIDAGKA
LSSAPLPQWV FEGPVAQAGG VHTPEGSWSA SQNTFVPQRR LPVHDRQLFP ESVLGASAAD
ANTAGTTISD EGDVRVWTLD GEVLIASIHS KMHAISPDVA EALGAAVELA EAEYKGLVIW
SPDEVFSVGA DLQAMLPAFV VAGIGAVEGA EEELQNVMLK IRYASVPVVS AVRGMALGGG
CELAVYSSKR VAAMESYIGL VEVGVGLIPG AGGLTYIARR AAENASASTG TDLLPFLTEG
FTAAAMAKVG TGALDSKKLG YLLDSDIIVP NKDELLYVAL QQARAMADAG YRAPLRRSFR
VAGRSGAATI KGQLVNMRDG GFISAHDFHI ASLIAHVVTG GDVDAGSLVT EEYLMALERK
AFCSLIVHPK TQERIMGMLS TGKPVRN
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