| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0806 |
|---|
| Symbol | |
|---|
| ID | 7971858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 889637 |
|---|
| End bp | 890500 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791404 |
|---|
| Product | isocitrate lyase family protein |
|---|
| Protein accession | YP_002942725 |
|---|
| Protein GI | 239813815 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATC CTTCCTTCAA GACCCGGCTC GCGCGCAAGG ACATCGTGCT CGCACCCGGC
GTGTACGACG CGCTCAGCGC GCTGGTGGCC GAGCAGGCCG GCTTCGAGGC GCTGTACCTC
TCGGGCGCCT CCATCGCCTA CACGCGGCTC GGCCGCTCCG ACATCGGCCT CACCACCTTC
ACCGAGGTCG AGGACACGCT CGCGCGCATC ACCGAGCGTG TGAACCTGCC CGTGATCGTC
GATGCCGACA CCGGCTTCGG CAACGCCCTC AACACCCAGC GCACCGTGCG CGGCTTCGAG
CGCGCGGGCG CGGCGATGGT GCAGATCGAG GACCAGACCT TCCCCAAGCG CTGCGGCCAC
CTCGACGGCA AGGCCGTGGT GCCCGAGCGC GAGATGGTCG GCAAGCTCAA GGCCGCGCTC
GATGCGCGCG CGTCGAGCGA CACGCTGATC CTCGCGCGCA CCGATGCGCT GGCGGTCGAA
GGGCTGGAGG CTGCGCTCGA CCGCGCCGAG GCGTACCTGG CCTGCGGCGT CGATGCGCTC
TTCATCGAGG CGCTGCGCTC GCCCGAGCAG ATGGATGCCG CCTGCCGGCG CTTCGGCGAC
CGCGTGCCGC TGCTGGCCAA CATGGTCGAA GGCGGCAAGA CGCCGATCCA GGACGCCGAT
GCGCTGCAGG CCCACGGCTT TCGCATCGCG ATCTTTCCGG GCGGCACGGC GCGCGCCGTG
GTGCACACGC TGCAGGGCTA CTACGCGAGC CTGCACCGGC ACCGCACCAC GCAGCCGTGG
CGGCCGCAGA TGCTGGACTT CGATGCGCTC AACGAGGTGA TCGGCACGCC GGAGCTGATG
CGCACCGGCC AGAAGTACGA CTGA
|
|---|
| Protein sequence | MTNPSFKTRL ARKDIVLAPG VYDALSALVA EQAGFEALYL SGASIAYTRL GRSDIGLTTF
TEVEDTLARI TERVNLPVIV DADTGFGNAL NTQRTVRGFE RAGAAMVQIE DQTFPKRCGH
LDGKAVVPER EMVGKLKAAL DARASSDTLI LARTDALAVE GLEAALDRAE AYLACGVDAL
FIEALRSPEQ MDAACRRFGD RVPLLANMVE GGKTPIQDAD ALQAHGFRIA IFPGGTARAV
VHTLQGYYAS LHRHRTTQPW RPQMLDFDAL NEVIGTPELM RTGQKYD
|
|---|
| |