| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0789 |
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| Symbol | |
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| ID | 7971841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 871338 |
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| End bp | 872084 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791387 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942708 |
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| Protein GI | 239813798 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.925789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAGC TCGACTTCGC AGGCCGCTAC GCCGTGGTGA CCGGCGGCGC GGCGGGGTTG
GGCTACGGCA TTGCCGAGCG GCTGATCGCA TCGGGCGGCA GCGTCACGCT CTGGGACCGC
GACGAGGCTG CCGCCGGCAA GGCCGCGGCG GCGCTCGGCC CCAAGGCCTT TGCCGTGAAG
GCCGACGTGG CGCAGCAGGC TTCCGTCGCT GCGGCGGTGG TGGCCACGCT CGCGCATTCG
CCGCGCATCG ATGCGCTGGT CAACAGCGCG GGCATCACCG GCCCCAACAC CAGGCTGTGG
GACTACCCGG TGGACGATTG GCGGCAGGTG ATGGAGGTCA ACATCAACGG CGTGTTCCTG
TGCTGCCGCG AAGTGGTGGC GCAGATGCGC GCGCAGGGTT ACGGCCGCAT CGTCAACATC
GCTTCGGTCG CGGGCAAGGA AGGCAATCCC AATGCCAGCG CGTACAGTGC AAGCAAGGCC
GCCGTCATTG CGCTCACCAA GTCGCTGGGC AAGGAGCTGG CCGACATCGG CATCCGCGTC
AACTGCGTGA CGCCCGCGGC GGTGAAGACA GCCATCTTCG ACCAGATGAC ACCGGAGCAC
ATCGCATTCA TGCTCTCGAA GATTCCCATG GGCCGCTTCG GCACGGTGGA GGAGGTGGCC
GCGATGGTCG GCTGGCTCTG CACCGAAGAT TGCTCGTTCT CCACCGGCGC CGTGTTCGAC
CTGTCCGGCG GCCGCTCCAC TTACTAA
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| Protein sequence | MNQLDFAGRY AVVTGGAAGL GYGIAERLIA SGGSVTLWDR DEAAAGKAAA ALGPKAFAVK
ADVAQQASVA AAVVATLAHS PRIDALVNSA GITGPNTRLW DYPVDDWRQV MEVNINGVFL
CCREVVAQMR AQGYGRIVNI ASVAGKEGNP NASAYSASKA AVIALTKSLG KELADIGIRV
NCVTPAAVKT AIFDQMTPEH IAFMLSKIPM GRFGTVEEVA AMVGWLCTED CSFSTGAVFD
LSGGRSTY
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