Gene Vapar_0788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0788 
Symbol 
ID7971840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp870607 
End bp871341 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content68% 
IMG OID644791386 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002942707 
Protein GI239813797 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACTCA AGGGCAAGAC CGTGCTCGTG ACGGCGGCCG GACAAGGCAT CGGCCACGCG 
AGCGTGCTCG CCATGGCCGC CGAAGGCGCG CAGGTGTGGG CGACCGACGT GAACGAGAAG
CTGCTGGGGC GCTATGCCGG CGTCGCCAAC GTGCGCACCG CGAAACTCGA CGTGCTCGAC
AAGGACGCGA TCGGCGCCTT CTTCAAGAGT CTTCCCGCGC TCGACGTGCT GTTCAACTGC
GCCGGCGTGG TGCACAACGG CACCGCGCTC GACGCCACCG ACAAGGACCT CGAATTCGCG
TTCGCCCTGA ACGTGCGCGC GCAGTTCTGG ACCATCCAGG CCGCGCTGCC CGGCATGCTG
GCCGCAGGAC GCGGCAGCAT CATCAACATG GCGAGCGTCT GCTCCAGCAT GAAGGGCCTG
CCCAACCGCT TCGTCTACGG CACCACCAAG GCCGCGGTGC TGGGCCTGAC CAAGAGCGTG
GCGGCCGACT TCGTGTCGCG CGGCATCCGC TGCAATGCCG TGTGCCCCGG CACAGTCGAC
ACGCCCTCGC TCGGCGAGCG CATCAATGCC AACGAAGACC CCGAAGCGGC GCGCAAGGCC
TTCATCGCGC GCCAGCCGAT GGGACGGCTC GCGCAGGCCG AGGAAATCGC GCCCGTGGTG
GTGTTCCTGG CGAGCGACGA ATCGGTGTTC GCCACCGGCC AGGCCTTCAC GGTGGACGGC
GGCATCACCA TATGA
 
Protein sequence
MRLKGKTVLV TAAGQGIGHA SVLAMAAEGA QVWATDVNEK LLGRYAGVAN VRTAKLDVLD 
KDAIGAFFKS LPALDVLFNC AGVVHNGTAL DATDKDLEFA FALNVRAQFW TIQAALPGML
AAGRGSIINM ASVCSSMKGL PNRFVYGTTK AAVLGLTKSV AADFVSRGIR CNAVCPGTVD
TPSLGERINA NEDPEAARKA FIARQPMGRL AQAEEIAPVV VFLASDESVF ATGQAFTVDG
GITI