| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0788 |
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| Symbol | |
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| ID | 7971840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 870607 |
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| End bp | 871341 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791386 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942707 |
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| Protein GI | 239813797 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACTCA AGGGCAAGAC CGTGCTCGTG ACGGCGGCCG GACAAGGCAT CGGCCACGCG
AGCGTGCTCG CCATGGCCGC CGAAGGCGCG CAGGTGTGGG CGACCGACGT GAACGAGAAG
CTGCTGGGGC GCTATGCCGG CGTCGCCAAC GTGCGCACCG CGAAACTCGA CGTGCTCGAC
AAGGACGCGA TCGGCGCCTT CTTCAAGAGT CTTCCCGCGC TCGACGTGCT GTTCAACTGC
GCCGGCGTGG TGCACAACGG CACCGCGCTC GACGCCACCG ACAAGGACCT CGAATTCGCG
TTCGCCCTGA ACGTGCGCGC GCAGTTCTGG ACCATCCAGG CCGCGCTGCC CGGCATGCTG
GCCGCAGGAC GCGGCAGCAT CATCAACATG GCGAGCGTCT GCTCCAGCAT GAAGGGCCTG
CCCAACCGCT TCGTCTACGG CACCACCAAG GCCGCGGTGC TGGGCCTGAC CAAGAGCGTG
GCGGCCGACT TCGTGTCGCG CGGCATCCGC TGCAATGCCG TGTGCCCCGG CACAGTCGAC
ACGCCCTCGC TCGGCGAGCG CATCAATGCC AACGAAGACC CCGAAGCGGC GCGCAAGGCC
TTCATCGCGC GCCAGCCGAT GGGACGGCTC GCGCAGGCCG AGGAAATCGC GCCCGTGGTG
GTGTTCCTGG CGAGCGACGA ATCGGTGTTC GCCACCGGCC AGGCCTTCAC GGTGGACGGC
GGCATCACCA TATGA
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| Protein sequence | MRLKGKTVLV TAAGQGIGHA SVLAMAAEGA QVWATDVNEK LLGRYAGVAN VRTAKLDVLD
KDAIGAFFKS LPALDVLFNC AGVVHNGTAL DATDKDLEFA FALNVRAQFW TIQAALPGML
AAGRGSIINM ASVCSSMKGL PNRFVYGTTK AAVLGLTKSV AADFVSRGIR CNAVCPGTVD
TPSLGERINA NEDPEAARKA FIARQPMGRL AQAEEIAPVV VFLASDESVF ATGQAFTVDG
GITI
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