Gene Vapar_0787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0787 
Symbol 
ID7971839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp869756 
End bp870469 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content71% 
IMG OID644791385 
ProductGntR domain protein 
Protein accessionYP_002942706 
Protein GI239813796 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.812552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCGCTCC AGACCGTCGA ACCCCAGCGC CTCTATCGCC AGATTGCCGA CCAGCTGCGC 
GGGCTGATCG GCAAGGGCGA GTTTGCCGTC GGCGCGCGGC TGCCGGCCGA GCGCGACCTG 
GCCCAGCAGC TCGGCGTGAG CCGGCCCTCG GTGCGCGAGG CGCTGATCGC GCTCGAGGTC 
GAGGGCTGGG TCGAGGTTCG CACGGGCTCG GGCGTGTATG TGCTGGACCG CTCGCACCGC 
GCGAGCAAGC CGGTGGCGCC CACCGAATGG GGCCCGCTGG AGCTGATTCG CGCGCGCCGC 
GTGATCGAGG GCGAGACGGC CGCCATTGCG GCTGCCGTGG GCAAGCGCAA GGACATCGAC 
GCCATGAGCC GCGCCATCGA AACGATGCGC GGGCTCGCCG ACCGCGAAAT ACTGCCGCTC 
GAGGGCGACC GCGAATTCCA CGTGGCCATC GTCAATGCCA GCGGCAACGC CGTGCTGGTG 
GAAACGGTGC AGAGCTTCTG GGATTCGCGC AACGGCCCGA TCTTCACGCG CCTGGGCGGC 
TACTTCGAGA CGGTGGCCTC CTGGCGCTCG GCGATTGCCG AGCACGAGGC CATCCGCGAC 
GCCGTGGCCG CGCGCGACGC CGAGGCCGCA CGCGCCGCCA TGCACGCCCA CATGGACAAC 
TCGCACCAAC GATTCAGCGC GAGTTGGCGC CGCGCCAAAA AAGCCTCGTC CTGA
 
Protein sequence
MPLQTVEPQR LYRQIADQLR GLIGKGEFAV GARLPAERDL AQQLGVSRPS VREALIALEV 
EGWVEVRTGS GVYVLDRSHR ASKPVAPTEW GPLELIRARR VIEGETAAIA AAVGKRKDID 
AMSRAIETMR GLADREILPL EGDREFHVAI VNASGNAVLV ETVQSFWDSR NGPIFTRLGG 
YFETVASWRS AIAEHEAIRD AVAARDAEAA RAAMHAHMDN SHQRFSASWR RAKKASS