| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0786 |
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| Symbol | |
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| ID | 7971838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 868714 |
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| End bp | 869709 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791384 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002942705 |
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| Protein GI | 239813795 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCA AACGCAACAC CCTCAAGGCC ATCGCCGCTT GCGCCCTGGC GGCCACCGCG
CTGGGCACTG CCGGCATCGC CGGCGCGCAG ACCAAGCTCA AGTGGGCGCA CGTCTACGAA
ACATCGGAGC CGTTCCACAA GTACTCGGTG TGGGCCGCGG AAGAAATCAA GAAGCGCACC
AACGGCAAGT ACGACATCCA GGTGTTCCCG GCCTCCAGCC TGGGCAAGGA GTCGGACATC
AACCAGGGCC TGACGCTCGG CACGGTCGAC ATCGTGCTGA CGGGCGCGAG CTTTGCGGGC
AACACCTACA AGCCGCTGGC CGTGACCTAC TTTCCGTTCA TCTTCCGCGA CTCGGAGCAT
CTGCTGAAGT ACGCCAAGAG CGATGTGTTC CAGGAGCTTG CCAAGGGCTA CGACGACAAG
AGCGGCAACC ACATCACGGC GCTCAACTAC TACGGCGCGC GCCATGTCAC CTCGAGCGCC
GCCAGGCCCG TTGCCAAGCC CGAAGACATG AAGGGCCTGA AGATCCGCGT GCCCGACGCG
CCGGCCTACC TGGCCTTCCC CAAGGCGCTG GGCGCCAATG CCACGCCCAT CGCGTTCGCC
GAGGTCTATC TTGCGCTGCA GAACAACACG GTCGATGCGC AGGAGAACCC GCTGCCCACC
ATCGAGGCCA AGAAGTTCTT CGAGGTGCAG AAGAACATCT CGCTCACGGG GCACATCATC
GACTCGCTGC TGACCGTGGT CTCCGGCCAG CTGTGGGGCA AGCTCTCGGC CGACGAGAAG
AAGATCTTCA CCGAGGTGAT GCAGGAGGCC GCCGAAAAGA CCGGCCGCGA CATCATCGCC
TCGGAGATCC GCCTGACCGA GGAGTTCAAG AAGCGCGGCA ACAACGTGAT CACCGTCGAC
AAGGCCGCAT TCCGCGAAGC CGTGCTGAAG AACACCAAGC CCACGGACCA CGGCTACCGC
CAGCAGGATT ACGACCGCAT AACGAGCATC AAGTAA
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| Protein sequence | MNSKRNTLKA IAACALAATA LGTAGIAGAQ TKLKWAHVYE TSEPFHKYSV WAAEEIKKRT
NGKYDIQVFP ASSLGKESDI NQGLTLGTVD IVLTGASFAG NTYKPLAVTY FPFIFRDSEH
LLKYAKSDVF QELAKGYDDK SGNHITALNY YGARHVTSSA ARPVAKPEDM KGLKIRVPDA
PAYLAFPKAL GANATPIAFA EVYLALQNNT VDAQENPLPT IEAKKFFEVQ KNISLTGHII
DSLLTVVSGQ LWGKLSADEK KIFTEVMQEA AEKTGRDIIA SEIRLTEEFK KRGNNVITVD
KAAFREAVLK NTKPTDHGYR QQDYDRITSI K
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