| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0785 |
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| Symbol | |
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| ID | 7971837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 868142 |
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| End bp | 868699 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791383 |
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| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
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| Protein accession | YP_002942704 |
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| Protein GI | 239813794 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAC CGAAGATCAT CGACGACGAA GGCCACTTCC ACGCGGAAGA CGAGGCCGTC
GACCTTTCCC ACACCATCGC CGAAGGCTGG ATCGCGCTCG CAATCTTCTG GATGCTCGCG
CTCACGGTGT TCTACCAGTT CGTCACGCGC TACGTGATGA ACGACTCGGC CGCATGGACG
GAGGAGGTGG CGCGCTACAT GCTGATCGCG GTGGTCTTCA TCGGCGCCGC CGTCGGGGTC
GCGAAGAACA GCCAGATCCA GGTCGACTTC TTCTATCGCC ACATGCCGGC GGCCATGGGC
CGCTGGATGT CGCGCGCGGT CGACGTGCTG CGCACCGCCT TCTTTGCAGC GGCCGCGGTC
ATGACGGTGC AGATGATGCT GAAGATCGGC AACACCACGC GCATGACCAT CGTCGATGCG
CCGATGAACA TCGTCTACGG CCTGTGCCTG TTCGGCTTCA TCGCGATGAC CTGGCGATCG
GTGCAGGTGG CGCGCATCCA CTGGAAGCGC GGCTACAGCG TGCTCGAGCG TCCCGAGTCC
ACACTGGCCG ACCGCTGA
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| Protein sequence | MTEPKIIDDE GHFHAEDEAV DLSHTIAEGW IALAIFWMLA LTVFYQFVTR YVMNDSAAWT
EEVARYMLIA VVFIGAAVGV AKNSQIQVDF FYRHMPAAMG RWMSRAVDVL RTAFFAAAAV
MTVQMMLKIG NTTRMTIVDA PMNIVYGLCL FGFIAMTWRS VQVARIHWKR GYSVLERPES
TLADR
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