| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0784 |
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| Symbol | |
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| ID | 7971836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 866725 |
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| End bp | 868119 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791382 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002942703 |
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| Protein GI | 239813793 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAA TATTCTTCCT GGTCTTCATG GCGGGCGGCA TTCCGGTGGC CGTGGCCATG
GCCGGCGCCT CGCTGGCCTA CATCGTGGTG AGCGGCAGCC TGCCGCCCTT CGTCGTGATC
CACCGCATGG TGAGCGGCAT CGACAGCTTT CCGCTGCTGG CGGTGCCCTT CTTCATCCTG
GCCGGCAACC TGATGAACAA CGCGGGCATC ACCACCCGCA TCTACAACTT CGCGCTCGCA
CTGGTGGGCT GGCTCAAGGG CGGGCTCGGC CATGTGAACG TGCTCGGTTC GGTGATCTTC
GCGGGCATGA GCGGCACGGC CATTGCCGAT GCCGCGGGCC TGGGCACCAT CGAGATCAAG
GCGATGAAGG AGCACGGCTA TTCGACCGAG TTTGCCGTGG GTGTGACGGC TGCCTCGGCC
ACGCTGGGCC CGATCATTCC GCCCAGCCTG CCCTTCGTGA TCTACGGGAT GATGGCCAAC
GTGTCGGTGG GGGCGCTGTT CCTCGCGGGC ATATTGCCCG GCGCGCTGCT GGCCATCTTG
ATGATGCTCA CGGTGGCCTA CTTCGCGCAC CGCAACGGCT GGGGCGGCGA CGTCAAGTTT
TCGAGCACCC GCTTCTTCAA GGCCATGTGC GAGCTCGCCG TGGTGATCGC CTGGCCGCTC
TTGATGTGGC TGCTGGTGGC CAGGCTGGGC ACGCCGCCGC AGCTCACGGT GTTTGCGGGC
CTCGCCTCGC TGTTCGTGCT CGACCGGATC TTCCGCTTCG AAGCACTGCT GCCCATCATG
ACGCCGGTGC TGCTGATCGG CGGCATGAGC ACGGGCCTGT TCACACCCAC CGAGGGCGCG
ATCGCCGCCT GCGTGTGGGC CATGATCCTG GGCTTCGGCT GGTACAAGAC CTTGTCGTGG
AAGATGTTCG TCAAGGTCTG CCTCGACACC ATCGAGACCA CGTCCACCGT GCTGTTCATC
GTGGCGGCCG CCTCGATCTT CGGCTGGATG CTCACCGCCA CCGGCGTGAC CACCGACATC
GCGAGCTGGG TGCTGGGCTT TACCAAGGAA GCCTGGGTGT TCCTGCTGCT GGCCAACCTG
CTGATGCTGT TCGTGGGCTG CTTCCTGGAG CCCACCGCGG CCATCACCAT CCTGGTTCCG
ATCCTGCTGC CGATTGCCAC ACAGCTGGGC GTGGACCCGA TCCACTTCGG CCTGGTGATG
GTGCTGAACC TGATGATCGG CCTGCTGCAT CCGCCGATGG GCATGGTGCT GTTCGTGCTG
GCGCGCGTGG CGGGCCTGAG CTTCGAACGC ACGACGATGG CGATCCTGCC GTGGCTCATT
CCGCTGCTGC TGGCGCTGGT GGTGATCACC TACGTACCTT CATTGGTACT GTGGTTGCCG
AAAATGTTCT TCTGA
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| Protein sequence | MLKIFFLVFM AGGIPVAVAM AGASLAYIVV SGSLPPFVVI HRMVSGIDSF PLLAVPFFIL
AGNLMNNAGI TTRIYNFALA LVGWLKGGLG HVNVLGSVIF AGMSGTAIAD AAGLGTIEIK
AMKEHGYSTE FAVGVTAASA TLGPIIPPSL PFVIYGMMAN VSVGALFLAG ILPGALLAIL
MMLTVAYFAH RNGWGGDVKF SSTRFFKAMC ELAVVIAWPL LMWLLVARLG TPPQLTVFAG
LASLFVLDRI FRFEALLPIM TPVLLIGGMS TGLFTPTEGA IAACVWAMIL GFGWYKTLSW
KMFVKVCLDT IETTSTVLFI VAAASIFGWM LTATGVTTDI ASWVLGFTKE AWVFLLLANL
LMLFVGCFLE PTAAITILVP ILLPIATQLG VDPIHFGLVM VLNLMIGLLH PPMGMVLFVL
ARVAGLSFER TTMAILPWLI PLLLALVVIT YVPSLVLWLP KMFF
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