| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0776 |
|---|
| Symbol | |
|---|
| ID | 7971828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 858215 |
|---|
| End bp | 859252 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791374 |
|---|
| Product | UDP-glucose 4-epimerase |
|---|
| Protein accession | YP_002942695 |
|---|
| Protein GI | 239813785 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1087] UDP-glucose 4-epimerase |
|---|
| TIGRFAM ID | [TIGR01179] UDP-glucose-4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCAA AAAGCGTTCT GGTGACAGGT GGTGCAGGTT TCATTGGCAG CCACACCTGC
GTCGCGCTGG CCGCCGCCGG ATACACGCCG GTCATTCTCG ACAATCTGGG CAACAGCGAC
ATCCGGGTAT TGGAGCGGTT GCGGCAGATC ACCGGCAGCG CGCCGCGGCT GATCGAGGGC
GATGTGCGCG ACCGGGCGCT GCTCGACCGC GTGCTGGGCG AAGAAGGCTT TGCGGCCGTG
ATCCACTTCG CGGGCCTCAA GGCCGTCGGC GACTCGGTGG CCGACCCGCT CACCTACTAC
GACAACAACG TGCACGGCAG CCTCGTGCTC GCCTCGGCCA TGCAGCAGGC GGGCGTGCGG
ACGCTGATCT TCTCGTCGTC GGCCACGGTG TACGGCGAAC CCGACCACTC GCCCATACCG
GAAGACGCGC CCTGCAGGCC GGCCAACCCC TACGGGCGCT CCAAGCACAT GGTGGAAGAG
GCGCTGGCCG ACCTGCACCG CGCACAACCC GGCTGGCGCA TTGCGCTACT GCGCTACTTC
AACCCCGTCG GCGCGCATGA AAGCGGGCTC ATCGGCGAGC ATCCGCAGGG CAAGCCGAAC
AACCTGATGC CTTTCGTCTG CCAGGTGGCC GTGGGGCAGC GCGACAAGCT GCTGATCCAC
GGCAACGACT ACCCCACGCC CGACGGCACC GGCGTGCGCG ACTACGTGCA TGTGATGGAC
CTCGCCGAAG GGCATGTGGC GGCGCTTCGG CATGCGCAAG GCCATGCGGG GCTGGTCACG
CTGAACCTCG GCACCGGCCG CGGCGCCTCC GTGCTGGAGG TGGTGCAAGC CTTCGAGCGC
GCGAGCGGGC GTTCGCTGCC TTATGAGATC GGTCCCCGCC GGCCCGGCGA CGTACCCGCG
TACTGGGGCG ATCCCTCGCT GGCGGAAGCC ACGCTCGGCT GGCGCGCGCA CCGCGGGCTC
GACCAGATGT GCGCCGACAG CTGGCGCTGG CAGCAGGGCA ATCCGAACGG CTACGAAAGG
TCACTGACCG CTTGCTGA
|
|---|
| Protein sequence | MAPKSVLVTG GAGFIGSHTC VALAAAGYTP VILDNLGNSD IRVLERLRQI TGSAPRLIEG
DVRDRALLDR VLGEEGFAAV IHFAGLKAVG DSVADPLTYY DNNVHGSLVL ASAMQQAGVR
TLIFSSSATV YGEPDHSPIP EDAPCRPANP YGRSKHMVEE ALADLHRAQP GWRIALLRYF
NPVGAHESGL IGEHPQGKPN NLMPFVCQVA VGQRDKLLIH GNDYPTPDGT GVRDYVHVMD
LAEGHVAALR HAQGHAGLVT LNLGTGRGAS VLEVVQAFER ASGRSLPYEI GPRRPGDVPA
YWGDPSLAEA TLGWRAHRGL DQMCADSWRW QQGNPNGYER SLTAC
|
|---|
| |