Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0758 |
Symbol | |
ID | 7971810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 828614 |
End bp | 831700 |
Gene Length | 3087 bp |
Protein Length | 1028 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644791356 |
Product | glycosyl transferase group 1 |
Protein accession | YP_002942677 |
Protein GI | 239813767 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATCG TCATCGATCT CCAGGGCGCC CTGTCCCAAG GAAACAGAAA ACGCGGTATC GGACGCTACA CGTCCTCGCT AGCTCAGGCG ATCGCCCGGC GAGCACGGAA TCACGAAATT GTCTTGGCAT TGAACGGACG CTTTCCGGAT GCCATTGACG AGATCCAGTC CACGTTCGAC GGAATGGTCG AGCCGCGCAA TTTTCGCGTT TGGCACCCTC CTCTCTATTC AGATCGTGCG AGTCCCGGCG GCCGCAGGGC AAGAGAGAAA CTCTACGAAG CTTTTCTGGC CTCGCTTCAA CCGGATGTGG TGCATGTTTC CAGTCTGTTC GAGGGGCTGG ATGATGCTGC CGTCACGAGC ATTGGCAGCT TCGTTCGTCA GCCCACCGCC GTCACGCTCT ACGACCTGAT CCCTCTGATC AATGCCCGCT CCTATCTGGA AGAAGACAGG ACCCGCTCGT GGTACATGCG AAAGATTGAG TCGCTCGGCC GCGCCAACAT GTGGTTGGCA ATCTCGGAGT CTTCTCGCCA GGAAGGCATC GACCATCTCG GCTTGGCGGA AGACCGCTGC ATCAATATTT CGACTGCTGC TTACGATCAT TTCAAACCGG CAAGGCCGAC CGCGCAGCGT GAGCAGGAGC TTCGCGATCA CTACGGCTTG AACCAACCTT TTGTGATGTA CACGGGCGGC ATCGATGTGC GAAAGAATCT CGATGGCCTG GTGCGCGCTT TTGGGCTTCT TCCGCCCGAA CTCGCGGCAC GACATCAACT GGCAATCGTC TGCTCTGCCC GTCCCGAAGA TCGCAAGGCA CTGCTAGAAC TGGCAGAAAA ATCAGGTTTG GAAGGCGGCA AGCTCGTTGT CACCGGCTTC GTGCCGGAGC AGGATCTCGT GGATCTCTAC AACCTGTGCA GCTTGTTCGT CTTCCCTTCA TGGCACGAAG GGTTCGGACT GCCTGCGCTG GAGGCGATGC ATTGCGGCGC CGTAGTGATC GCAGCCAATA CTTCGAGCCT GCCGGAAGTC CTCGGTCGGG AAGATGCGCT GTTCGCCCCG AGAAACGATG AGGCTATGGC CATGAAGATG GTCCAGGGAT TGACCGACGA AGGATTCCGT TCGGTTCTGA AAGAACATGG ACTGAGACAA GCACAGAAAT TCTCTTGGGA TGAATCGGCT CGACGTGCCA TCGAAGGGCT CGAGGCGCTC TATCGCTCAT CGAGCTGCGC ACCATGCAAG CCCGAGTCGC GGCATTCACG CCCGCGTCTA GCCTATCTCT CGCCACTGCC CCCACAACCG AGCGGCATTG CAGACTACAG CGCCGAATTG CTTCCAGCCC TTGCGCGACA CTACGAAATC GACCTCGTGA CCGGTCTAGC TGCCACCAGC GACCCGGGCC TGACAGCGTC CTTTCCCCTT CGTTCGCTCG AGTGGTTCCG AAGGAACTCC AACCTCTTCG ACCGCGTGCT CTATCACTTC GGGAACTCGG AATTTCACGA GCACATGTTC CCCTTGCTGA AGGAAATACC CGGCGTCGTC GTGTTGCACG ATTTCTATCT GAGCGGGGTT CAAGCATTCA GGGAGTTCGG CACTGGACAG CCGCATGCAT GGGCCCGCGC ACTCTACGAC TCGCACGGTT ATCCGGCAAT CATCCAGCGG TTTCGCACCG ACGATGTCGC GGACACCATC TACAGATTCC CTTGTAGTCT TGACATCCTG CAGTACGCAC AAGGCGTGAT CGTGCACTCG CCGCACTCGA TCGACCTCGC CCGGAACTGG TATGGATCGA TCGCCGACAA CCTGGAGATG GTTCCGTTGC TACGTGCGCC AGCGGCAAAG GATCCTGGCG AGCGCCAGCG AGCGCGCGAC GAGCTGGGAT TAAAACCGGA TGATTTTCTT GTGTGCAGCT TCGGACTCCT GGGCCCAACA AAGCTGGTCC ATCGAGTGCT TCAGGCATGG CAGGCGTCCC CGCTTGCCAG AGACCCACGA TGCAAATTGC GCTTCGTAGG CGAAAACCCT TCAGATGAGT ATGGCACCGA GTTGCTGCGT CAGATTGCGC AGGGTGGCCG AGAGGAGGAC GTGGAGATCA CGGGTTGGGC CTCCTCTGAA ACGTATCGCC AGTATCTTGC CGCAGCTGAT CTAGCGGTCC AGCTTCGGGC AAAGTCGCGC GGGGAAACCT CTGCAGCAGT GCTCGATACG ATGAGTCGGA GCATACCGAC CATCGTCAAT GCTCATGGCT CCATGGCCTT TCTGCCTCGC GATGCCGTTC TCATGCTCGA TGATGACTTT GATGACGCGC AATTGATTGA AGCCCTCGAG AGCCAGTGGC GCGATCCGGC CGGACGTTTC GCATTGGGAG CAAAGGGGCG GACCATCGTG GAGACGCTGC ACGCGCCTGC AGCCTGTGCA AAGCTCTATG CTGAAGTGAT CGAGCGGTTC GTCCAGCGCG CCGATGCTGG CCGCACAGGA TTAGTCCGAG CCATCGGGGC AGAAGATCCC CTGGCCCAAT CCGCAGAAGG CCACCACGAA GCCCTCGAAT TGGCCTCGGC AATCGCCGAA AGCCTTCCGC TCCCGATGTC ACAGCGGCAG TTGTTCATCG ATGTCTCCTA CCTGGCCCAG AGTGGCACAC AAACACAGCA AACGCTCGAG TGCCTGATAC GAGAGGCGCT GGATGTTAGC CTCGAGGGCT ACAGGATCGA ACCTGTTCGT ACATCAGAGA GTGACGGGCA GGGCTATTGC TATGCCAGAC GATTTGCGCT CGCGCTTCGA AACCTCCCCG CCGACGCACT CGCCGACGAA CCGATCGACT TTCGTGCGGG GGATCTCTTT GCCGTCCTGT CTGCATCGCC AGACTCGGCC GCCGAACACG CGGAGTTCTA CCGAAAATTA CGCCACTCCG GCGTGCATGT CCGATTTTTT CAGATCGCCG CCGCTCCTGC CTTTACGGGT CACGAGGGCT CGGGCGACGT GAAAGTTCAC CTCCTTCATC TGAATTCGAC GACCACACCT GACAGCCGTT CCGATGAGCA GGCCGTCAAG GCTTTTCTTA GGTCTCTGAT CAACGGCGAC ACGTTTTTCC GATCCGATCG CAGCTGA
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Protein sequence | MRIVIDLQGA LSQGNRKRGI GRYTSSLAQA IARRARNHEI VLALNGRFPD AIDEIQSTFD GMVEPRNFRV WHPPLYSDRA SPGGRRAREK LYEAFLASLQ PDVVHVSSLF EGLDDAAVTS IGSFVRQPTA VTLYDLIPLI NARSYLEEDR TRSWYMRKIE SLGRANMWLA ISESSRQEGI DHLGLAEDRC INISTAAYDH FKPARPTAQR EQELRDHYGL NQPFVMYTGG IDVRKNLDGL VRAFGLLPPE LAARHQLAIV CSARPEDRKA LLELAEKSGL EGGKLVVTGF VPEQDLVDLY NLCSLFVFPS WHEGFGLPAL EAMHCGAVVI AANTSSLPEV LGREDALFAP RNDEAMAMKM VQGLTDEGFR SVLKEHGLRQ AQKFSWDESA RRAIEGLEAL YRSSSCAPCK PESRHSRPRL AYLSPLPPQP SGIADYSAEL LPALARHYEI DLVTGLAATS DPGLTASFPL RSLEWFRRNS NLFDRVLYHF GNSEFHEHMF PLLKEIPGVV VLHDFYLSGV QAFREFGTGQ PHAWARALYD SHGYPAIIQR FRTDDVADTI YRFPCSLDIL QYAQGVIVHS PHSIDLARNW YGSIADNLEM VPLLRAPAAK DPGERQRARD ELGLKPDDFL VCSFGLLGPT KLVHRVLQAW QASPLARDPR CKLRFVGENP SDEYGTELLR QIAQGGREED VEITGWASSE TYRQYLAAAD LAVQLRAKSR GETSAAVLDT MSRSIPTIVN AHGSMAFLPR DAVLMLDDDF DDAQLIEALE SQWRDPAGRF ALGAKGRTIV ETLHAPAACA KLYAEVIERF VQRADAGRTG LVRAIGAEDP LAQSAEGHHE ALELASAIAE SLPLPMSQRQ LFIDVSYLAQ SGTQTQQTLE CLIREALDVS LEGYRIEPVR TSESDGQGYC YARRFALALR NLPADALADE PIDFRAGDLF AVLSASPDSA AEHAEFYRKL RHSGVHVRFF QIAAAPAFTG HEGSGDVKVH LLHLNSTTTP DSRSDEQAVK AFLRSLINGD TFFRSDRS
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