Gene Vapar_0739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0739 
Symbol 
ID7971791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp810633 
End bp811265 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content69% 
IMG OID644791337 
ProductLysine exporter protein (LYSE/YGGA) 
Protein accessionYP_002942658 
Protein GI239813748 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAGCT TGACCGAAAT CGCCTGGTTC GCACTCGCCT CGATGCTGCT GGCGCTCACG 
CCGGGGCCGA ACATGATCTA TTGCGTGTCG CGCACGCTCA TCCAGGGCCG GCGCGCCGGG 
CTGGTCTCGC TCGGCGGCGT GATGATGGCC TTTCTTGCCC ACCTGTTCGC GGCCGCGCTC 
GGCCTCACCG CGTTGCTGCT GGCGGTGCCG GTCGCGTTCG ACGCCATCCG GCTGGCCGGC 
GCGGCCTACC TGCTGTGGCT CGCATGGCAG GCGGTCAAGC CCGGCGGCAA TGCGCCCTTC 
GAGGCGCGCG CGCTGCCGGC CGATCCGCCG GGCAAGCTGT TTCGCATGGG CTTTCTCACC 
AACCTGCTGA ACCCGAAGGT CGCGATGTTC TACCTCTCGT TCTTTCCGCA GTTCATCCAT 
CCCGAGCGCG GCTCGGTGCT GCTGCAGAGC ATGCAGCTGG GCATGGCGCA GATGGCGAGC 
AGCGCCGCGG TCAACACCGC GGTGATCCTC GGCGCCGCGA GCATCACGGC GGTGCTGTCG 
CAAAGCGCCG GCTGGCTGCG CGCGCAGCGC TACATCATGG GCAGCGTGCT GGCCGCACTG 
GCGGTGCGCG TGGCGCTGAC GGAACGCAAG TAA
 
Protein sequence
MLSLTEIAWF ALASMLLALT PGPNMIYCVS RTLIQGRRAG LVSLGGVMMA FLAHLFAAAL 
GLTALLLAVP VAFDAIRLAG AAYLLWLAWQ AVKPGGNAPF EARALPADPP GKLFRMGFLT 
NLLNPKVAMF YLSFFPQFIH PERGSVLLQS MQLGMAQMAS SAAVNTAVIL GAASITAVLS 
QSAGWLRAQR YIMGSVLAAL AVRVALTERK