| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0736 |
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| Symbol | |
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| ID | 7971788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 807630 |
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| End bp | 808427 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791334 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942655 |
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| Protein GI | 239813745 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.425912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCTCC AGCTCCAGGA CCAGCACGTT CTCATCACCG GCGGCAGCAA GGGCATCGGC
CTGGCCTGCG CGCTGGGCTT CCTGCAGGAG GGCGCGCGCG TGAGCCTCGT GTCGCGCGAT
TTGCAGAACC TGGAGCGGGG CCGCAAGGCG CTGGCCGAGG CGTTTGCGCA GGCCGAGGGC
CGGGTCTCGG TGCATGCGGC CGACCTCAAG GACCCGGCCA GCGCCGTGGC CGCGCTCGAT
GCGGCCGAGC TGGCCTTCGG ACCGGTCGAC GTGCTGGTGA ATTCGGCCGG CGCCGCGCGC
CGCACGCCGC CCGACGAGCT GGATGCCACT GCCTGGCACG ACGCGATGGA CGCCAAGTAC
TTCACCTACA TCCACATGAT CGATCCGGTG GTCAAGCGCA TGGGCCGGCG CGGCCGCGGC
GCGATCGTCA ACGTGATCGG ACAGGGCGGC AAGGTCGCGA GCCCGGTGCA CATGGCCGGC
GGCGCCGCCA ACGCGGCGCT GATGCTGGTG AGCGCCGGCA TGGCCGCGGC CTATGCGGGC
AAGGGCGTGC GCGTGAATGC GGTGAACCCC GGCCTCACGC TGACCGAGCG GCTGCAGGAA
GGCATGAAGG CGGACGCGAA GCTGCAGGGC ATCGGCAGCG ACGAGGCGCT GCAGCGCGCC
ACGGCCCGGC TGCCGCTCGG GCGCATCGCC ACGCCGCAGG AGATTGCCAA CACGGTCGTG
TTCCTGGCCT CGCCGAAGGC GAGCTATGTG ACGGGCGCGA TCGTCGCGAT GGACGGCGCC
GTGACGCCGA TGATCTAA
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| Protein sequence | MDLQLQDQHV LITGGSKGIG LACALGFLQE GARVSLVSRD LQNLERGRKA LAEAFAQAEG
RVSVHAADLK DPASAVAALD AAELAFGPVD VLVNSAGAAR RTPPDELDAT AWHDAMDAKY
FTYIHMIDPV VKRMGRRGRG AIVNVIGQGG KVASPVHMAG GAANAALMLV SAGMAAAYAG
KGVRVNAVNP GLTLTERLQE GMKADAKLQG IGSDEALQRA TARLPLGRIA TPQEIANTVV
FLASPKASYV TGAIVAMDGA VTPMI
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