| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0727 |
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| Symbol | hemE |
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| ID | 7974690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 797177 |
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| End bp | 798289 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791326 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_002942647 |
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| Protein GI | 239813737 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTCG CCCCCTTGCA AAACGACACT TTCCTGCGGG CCTGCTGGCG CCAGGCCACC
GACCACACGC CCGTCTGGCT CATGCGCCAG GCCGGGCGCT ACCTGCCCGA GTACGTGGCC
ACCCGCGCCA GGGCCGGCAG CTTCATGGGG TTGGCGACCA ACACAGACTA CGCCACCGAA
GTCACGCTGC AGCCGCTTGA GCGCTATCCG CTGGATGCGG CCATCCTGTT CTCCGACATC
CTCACCGTGC CCGACGCCAT GGGCCTGGGC CTCTCGTTCG AGGCCGGCGA AGGCCCGCGC
TTCGCGCGCC CGGTGCAGGG TGAAGCGGCC GTTGCGGCGC TCGAGGTGCC CGACATGGCC
AAGCTGCGCT ACGTGTTCGA CGCCGTGGCG TCGATCCGCA AGGCACTCGA TGGCCGCGTG
CCGCTGATCG GCTTTTCTGG CAGCCCCTGG ACGCTCGCCT GCTACATGGT GGAAGGCGCG
GGCTCGAGCG ACTACCGCCT CGTGAAGAGC ATGCTCTACA GCCGCCCCGA CCTGATGCAC
CGCCTGCTCG CGGTCAATGC CGATTCGGTG GCCGCCTACC TCAATGCGCA GATCGATGCC
GGCGCGCAGG CCGTGATGGT GTTCGACAGC TGGGGCGGCG TGCTGGCCGA CGGCGCGTTC
CAGGAATTCA GCCTCGCCTA CACGGCGCGC GTGCTGGCCG GCCTCCAGCG CAACGGCGCC
GACGGCCAGC CCGTGCCGCG CATCGTCTTC ACCAAGGGCG GCGGCCTGTG GCTCGAGGCC
ATGCGCGAAC TCGACTGCGA GGTGCTCGGC GTCGACTGGA CCGTGAACCT CTCGGCCGCA
CGCCGGCTGG TCGGCGAAGG CACCGATGCC AAGGCCAAGG CCCTGCAGGG CAACATCGAC
CCCAACGTGC TGTTCGCACC GCCCGCGCAG ATCGAGGCCG AGGTGGCGAA GGTGCTGCAG
GCCTTCGGCC AGCCGCATGC CGATGCCGCC GCCAAGGGCC CGACCCACAT CTTCAACCTG
GGCCATGGCA TCAGCCAGTT CACGCCACCG GACCACGTGG CGGCGCTGGT GCAGGCGGTG
CACGCACAAT CGCGCGCCCT GCGCAAAGGT TAA
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| Protein sequence | MPFAPLQNDT FLRACWRQAT DHTPVWLMRQ AGRYLPEYVA TRARAGSFMG LATNTDYATE
VTLQPLERYP LDAAILFSDI LTVPDAMGLG LSFEAGEGPR FARPVQGEAA VAALEVPDMA
KLRYVFDAVA SIRKALDGRV PLIGFSGSPW TLACYMVEGA GSSDYRLVKS MLYSRPDLMH
RLLAVNADSV AAYLNAQIDA GAQAVMVFDS WGGVLADGAF QEFSLAYTAR VLAGLQRNGA
DGQPVPRIVF TKGGGLWLEA MRELDCEVLG VDWTVNLSAA RRLVGEGTDA KAKALQGNID
PNVLFAPPAQ IEAEVAKVLQ AFGQPHADAA AKGPTHIFNL GHGISQFTPP DHVAALVQAV
HAQSRALRKG
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