Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0725 |
Symbol | |
ID | 7974688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 793055 |
End bp | 794290 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791324 |
Product | transposase IS116/IS110/IS902 family protein |
Protein accession | YP_002942645 |
Protein GI | 239813735 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGTGC TTTATCCGCG CTGTGCGGGC CTGGACGTGC ACAAGGACAC CATCGTGGCC TGCGTGCGAT GCGTCTGCCC GCCCATGCAT CAGGAGGTGC GCAGCTTCGG CACCACCACC ACCGAATTGC TCGCGCTGGG CGATTGGCTG GCCGAGCACG ACTGCACCCA TGTGGCGATG GAGGCCACCG GCGTGTACTG GAAGCCGGTG TGGCACGTGC TGGAGGCTGA GTTCGAGTTG GTGCTGGCCA ACGCCGCGCA CATCCGCAAC GTGCCCGGCC GCAAGAGCGA CGTCAACGAC GCGATGTGGA TTGCCGATCT CTTGGCGCAC GGCCTGATCC GCTCCAGCTT CGTGCCGCCG CAGGCGATCC AGCAGCTGCG CGACCTCACG CGCACCCGCA AGCAACTCGT TCGGGAGCTC TCCCAGCACT CGCTGCGCAT CCAAAAGGTG CTGGAGGACG CTAACCTCAA GCTGGGCAGT GTGTTGTCGG ACGTGCTGGG CAAGAGCGGG CGCGCGATGC TCGATGCCAT CGTGGCCGGC CAGAGCGATC CGGCGCAACT GGCTGCGCTG GCCCAGGGCA CGGCGCGCAA CAAGAGCGCC GAATTGCGCG AGGCGCTGCG CGGGCGCATC ACCGAGCACC ACCGCACCAT GCTGCGGCTG CACCTGCAGG TGGTCGACGC CTTGCACCAC ACGTTGGCCG AACTGGATGC GGCCGTGGGA AAAGCGCTGG CGCCGATCCG GCAGCGCGCC CGCCTGCTCA CGACGATGCC CGGGGTCAGT GACCTGACGG CCAGTGTCGT GGTGGCGGAG ATCGGCGTGG ACATGTCGCG CTTCCCCACT GCCGGGCATC TGATCTCCTG GGCAGGCCTG TGCCCGCGCA GCGACGAGAG CGCCGGCAAG CGCCGATCCA CCCGCGTTCG CAAGAGTGGC ACCTGGATCA AGACCACCCT GGTGACCGCC GCCTGGGCCG CGGTGCGCGT CAAGTCCAGC TACCTGCGAG CGCAGTTCCT GCGTATCAAG GCACGTCGCG GAGCCAAGAA GGCCATCCTC GCGGTGGCCG CCTCGATGCT CACCGCCGCG TACCACATGC TTCGTGACGG CACCGAGTAC AACGACCTCG GCTGCGAGCA CTTCGACCGC CAGGATCGCA CCAAAACCAT CCGTCGCCTC ATGAAACGAC TTCAAGATCT CGGCTGCGAG GTTCCGGTGC AGGCTCATGC GGGGAGCGCT TCTTAG
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Protein sequence | MQVLYPRCAG LDVHKDTIVA CVRCVCPPMH QEVRSFGTTT TELLALGDWL AEHDCTHVAM EATGVYWKPV WHVLEAEFEL VLANAAHIRN VPGRKSDVND AMWIADLLAH GLIRSSFVPP QAIQQLRDLT RTRKQLVREL SQHSLRIQKV LEDANLKLGS VLSDVLGKSG RAMLDAIVAG QSDPAQLAAL AQGTARNKSA ELREALRGRI TEHHRTMLRL HLQVVDALHH TLAELDAAVG KALAPIRQRA RLLTTMPGVS DLTASVVVAE IGVDMSRFPT AGHLISWAGL CPRSDESAGK RRSTRVRKSG TWIKTTLVTA AWAAVRVKSS YLRAQFLRIK ARRGAKKAIL AVAASMLTAA YHMLRDGTEY NDLGCEHFDR QDRTKTIRRL MKRLQDLGCE VPVQAHAGSA S
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