Gene Vapar_0717 details

Gene Information

• Locus tag: Vapar_0717
• ID: 7974680
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 784234
• End bp: 786159
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644791316
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_002942637
• Protein GI: 239813727
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATC ACGGCGCTGG GAGTGCACCC CTGAACCAAC GCACTCTGAC CGACGCCGAT 
TTCAGGCTGA TGGTCGACTC GGTCACCGAC TACGCCATCA TCGTCCTCGA TCCTGGCGGC 
ATCGTCATCA GCTGGAACGA GGGCGCCCGC CAACTCAAGG GATACGACGC CCCCGACGTC 
CTGGGGCGGC ACTTCTCGCT TTTCTATCCG ACCGAGCTGA TCGAGCAGAA CCGGCCGGAG 
CAGGCACTCG AAACGGCGCG CCGCGATGGC CGCTTGGAGG AAGAAGGCTG GCGCCTGCGC 
AGCGACGGCA CGCGCTTCTG GGCCAGCGTG GTCATCACGC GGATCCCCGG CGCGGGCGGA 
GAAGTCCGCG GCTTCTCGCT GATCACCCGG GACCGCAGCG AGATCCGCCG CCAGGACGAG 
ATGCTGCGCA TGAGCGAGGA GCGCTTCCGG CTCTTGGTCG AGGGCGTGAA GGACTATGCG 
ATCTTCATGC TCGACCCGGG CGGCCACGTC GTGAGCTGGA ATCTCGGCGC GCAGAAGAAC 
AAGGGCTACG AGGCCTCGGA GATCATCGGG CAGCACTTCT CCAGGTTCTA TCCGCCGGAG 
GTCGCCGCCA GCGGCTGGCC CCAGCAGGCG CTGCGCAACG CGCTGCGCGA CGGCCGCTTC 
GAGGACGAGG GCTGGCGCAT CCGCAAGGAC GGCAGCCGGT TCTGGGCCAG CGTGGTGATC 
ACCGCGCTGC ACGATGCCAC CGGCAGGCAC CGCGGCTTTG CCAAGGTCAC GCGCGACCTC 
ACGGAGCGCC GCCGCGTGAC CGCGCTCGAG GACGAGGGGC GCCGCGTGAC GAACTTCCTT 
GCGATGCTCG GGCACGAACT GCGCAATCCG CTGGCGCCGA TCTCCAACGC GCTCGAGCTC 
CTCAAGCGGG AGAAGGCGGA GTCGGCCGCG CTCGTGCACA CCCGCGACAT CATCGGCCGG 
CAGCTGCGCC AGATCACCCG GCTGGTGGAC GACCTGCTCG ACGTCGGCCG TATCACCAGC 
GGCAAGATCC AGCTCGAGAA CAAGCCGGTT CGCCTGCGCG ATGCCATCGC CGAGGCCATC 
GAGGCGGTGC GCCCGCTGAT CGACGGCAAG TCGCAGACCC TGCACCTGCA GACGCAGGAC 
GCGGACCCCT GGATCGCCGG AGACAGTGCG CGCGTCGTCC AGATCGTCAG CAACCTGGTC 
CACAACGCCG CCAAGTTCAC CGGGAACGGC GGCAACATCC ACGTGTCGCT CTCGCGGACC 
GCAGCGGATG CGGACATCAG CGTGCGCGAC GACGGGCCCG GCATACCGCC GCAGGACCTG 
CAGCGGATAT TCGACCTGTT CGTGCAGGGC GAGCAGAACC TGGCCAGGAC GCAGGGCGGC 
CTCGGCCTGG GGCTCAGCCT GGTACAGCAG CTCACCACGC TGCACGGCGG GCGCGTCAGC 
GCGTTCAGCA CCGGCCGGCC GGGCGAGGGC AGCGAGTTCG TGGTGCAGTT CCCGACCACC 
CAGGCGCCGG TCGCCATGCT CGAGGCGCAG CCGCGGCCGG TGGGCGAGCA GCGCGTGCTG 
GTGGTGGACG ACAACGTGGA CGCGGCCGAG ACCATGGCGA TGCTGCTGGA GGCGCTGGGC 
TACAAATCCA GCGTCGTGCA TGGCGGACTG GCTGCCATCG AGGCGGTGAA GGCGCAGGAC 
CCGGACGTGG TGCTGCTGGA CATCGGCCTG CCCGACCTGA GCGGCCATGA AGTCGCCCGC 
CGCGTGCGCG CCGAGATGGT CAACCCGCCG CCGCTGATTG CCGTCACCGG CTACGGTCAG 
GCCAGCGACA GGGAGACCAG CCTGGAGGCC GGCTTCCGGG CCCACCTGAC GAAGCCGGTC 
GATGTCGACA AGCTCTCGGC GCTGCTCGAA CGGCTGCTGG AGCCGCCTCG GTTCAAGGCC 
GCGTAG 

 

Protein sequence

MADHGAGSAP LNQRTLTDAD FRLMVDSVTD YAIIVLDPGG IVISWNEGAR QLKGYDAPDV 
LGRHFSLFYP TELIEQNRPE QALETARRDG RLEEEGWRLR SDGTRFWASV VITRIPGAGG 
EVRGFSLITR DRSEIRRQDE MLRMSEERFR LLVEGVKDYA IFMLDPGGHV VSWNLGAQKN 
KGYEASEIIG QHFSRFYPPE VAASGWPQQA LRNALRDGRF EDEGWRIRKD GSRFWASVVI 
TALHDATGRH RGFAKVTRDL TERRRVTALE DEGRRVTNFL AMLGHELRNP LAPISNALEL 
LKREKAESAA LVHTRDIIGR QLRQITRLVD DLLDVGRITS GKIQLENKPV RLRDAIAEAI 
EAVRPLIDGK SQTLHLQTQD ADPWIAGDSA RVVQIVSNLV HNAAKFTGNG GNIHVSLSRT 
AADADISVRD DGPGIPPQDL QRIFDLFVQG EQNLARTQGG LGLGLSLVQQ LTTLHGGRVS 
AFSTGRPGEG SEFVVQFPTT QAPVAMLEAQ PRPVGEQRVL VVDDNVDAAE TMAMLLEALG 
YKSSVVHGGL AAIEAVKAQD PDVVLLDIGL PDLSGHEVAR RVRAEMVNPP PLIAVTGYGQ 
ASDRETSLEA GFRAHLTKPV DVDKLSALLE RLLEPPRFKA A