Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0711 |
Symbol | |
ID | 7974674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 775066 |
End bp | 775980 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644791310 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002942631 |
Protein GI | 239813721 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCTTC ACACGCTGCA GGAAAGCGCG GTCCGCTACT TCCTGGAGGT GGTCAGGACC GGGTCGGTGA AGGACGCGGC GCTCAAGCTC AACGTGGCGC CTTCGGCCGT GAGCCGGCAG GTGGCGCGCC TGGAGCGCGA ACTCGACACG CTGCTGTTCG ACCGGCACGC GCGCGGCATG GTGCCCAATG CGGCCGGCGA ACTGCTGGCC GCGCATGCCA AGCGGGTGCA GCAGGACATC GAGCGCGTGG CCGGCGAGAT CCAGGGCCTG CGCGGCCTGC GCAGCGGGCG CGTGCGCGTG GCGAGCACCG AGGGCTTCGC GTTCGACTTT CTTCCCACGC TGATCTCGCG CTTTCGCGCG AAGCATGAAG GCATCCGCTT TCACCTGGAG GTCTGCCCGC CCCACGAGAT TCCCGGCCGC ATCCGCGACG GCGAAGCGGA CGTGGGCATC ACGCTGAGCG CGGTGCCCGA GCCCGGCATC CGGATCGAGC TGCGCCACCC GAGCCCGATC CTCGCCGTGA TGGCGAGCGA CCATCCGCTG GCGGGGCAGC GGCAGCTCTC GTTGCGCCAG GTGGCGGCCT ATCCGCTGGG CCTGCCGCCG CGGGACAGCT CGATACGGCA GCTGCTGGAC ATCAGCTGCA GCCGGCAGGG GCTGCAGTAC GTGCAGGCCA TGTCGAGCAA CCATGCGAAT GCGCTGGTGA GCTTTGCGGC CGCGGGCGGC GGCACCATCG CCTTCTATGG CGAGCTGTCG ATCCGCACGC AGCTCAAGTC GAAGGCGCTG GTGGCCATTC CGCTGAAGGA CCGCGAGATG AACGAGCGCC ACCTCGAAGT CGAGACGCTC GCAGGCCGTT CATTGCCCGA TGCAGGCAAG GCTTTCGTGC GGTTTTTGAC GGATGCCATC AAGGCCTCGG CCTGA
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Protein sequence | MSLHTLQESA VRYFLEVVRT GSVKDAALKL NVAPSAVSRQ VARLERELDT LLFDRHARGM VPNAAGELLA AHAKRVQQDI ERVAGEIQGL RGLRSGRVRV ASTEGFAFDF LPTLISRFRA KHEGIRFHLE VCPPHEIPGR IRDGEADVGI TLSAVPEPGI RIELRHPSPI LAVMASDHPL AGQRQLSLRQ VAAYPLGLPP RDSSIRQLLD ISCSRQGLQY VQAMSSNHAN ALVSFAAAGG GTIAFYGELS IRTQLKSKAL VAIPLKDREM NERHLEVETL AGRSLPDAGK AFVRFLTDAI KASA
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