| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0697 |
|---|
| Symbol | |
|---|
| ID | 7974660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 756946 |
|---|
| End bp | 757914 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791296 |
|---|
| Product | cytochrome c oxidase, subunit II |
|---|
| Protein accession | YP_002942617 |
|---|
| Protein GI | 239813707 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
|---|
| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACG CGCTGCACGA CGTGCTCGCC CCCTTCGGTC CGCAGGCCGG CCATGTGCGC
GGCCTGTGGA CGTTGACGCT GGCGGTGTGC ACGGTGGTCT TCGCAGCCGT GCTGGCGGCG
CTGCTCGTCG CGCTGCTGCG CGCGCAGCGC GCGGGTGCGG AAAGCGCGCC GGACCTGTCG
TCCCTGGGCC GGCCCGAGCC CGGCCGCCGG CGCAGCGTGA TCGCGGCCGT GGCGGCCTCC
ACGCTGCTGC TGCTCGCGCT CATCGCGGCC AGCATCTTCA CCGACCGCGC GCTCGCGCGG
CTGTCCACCG ACGGCGCGCT GCAGCTCGAG GTGACGGCCC ACCAGTGGTG GTGGGAGGTG
CGCTACGTGG AGCCGCAGGT GGCCGACAGC TTCATGACCG CCAACGAGAT CCATGTGCCG
ACCGGCCGGC CCGTGATCGT CACGCTCAAG GCCGACGACG TGATCCACAG CTTCTGGGTG
CCGAGCCTCG CGGGCAAGAA GGACCTGATC CCGGGCCGCA CCGCCACCCT GAATTTCCGC
GCCGACCGCG ACGGCATCTA CCGCGGCCAG TGCGCCGAGT TCTGCGGCTC GCAGCATGCG
CTGATGGCCT TCTTCGTGCT GGCCGAACCG CCCGAGCGCT ATGCGGCCTG GGCCGCGGCG
CAGCGCCGCA CGGCGGGCGA ACCCGCAGAA GGCCAGCCGC TGCGCGGCCG CGAAATTTTC
ATGCGTTCGA GCTGCGCGAT GTGCCACGCC ATCGACGGCA CCTCGGCGCA GGCCGTGCGC
GGGCCGAACC TCACGCACCT GGCAAGCCGC GGCACGCTGG CCGCGGGCAG CCTGGCCAAC
ACGCCGGAAG ACCTGCGGCG CTGGATCGCC GATCCGCAGC AGGTCAAGCC CGGCACCTAC
ATGCCCGCCA CCCGGCTCTC GTCCGAAGAC ATGGACGCGC TGGTCGGCTA CCTGCAGACC
CTGCGCTGA
|
|---|
| Protein sequence | MMDALHDVLA PFGPQAGHVR GLWTLTLAVC TVVFAAVLAA LLVALLRAQR AGAESAPDLS
SLGRPEPGRR RSVIAAVAAS TLLLLALIAA SIFTDRALAR LSTDGALQLE VTAHQWWWEV
RYVEPQVADS FMTANEIHVP TGRPVIVTLK ADDVIHSFWV PSLAGKKDLI PGRTATLNFR
ADRDGIYRGQ CAEFCGSQHA LMAFFVLAEP PERYAAWAAA QRRTAGEPAE GQPLRGREIF
MRSSCAMCHA IDGTSAQAVR GPNLTHLASR GTLAAGSLAN TPEDLRRWIA DPQQVKPGTY
MPATRLSSED MDALVGYLQT LR
|
|---|
| |