Gene Vapar_0696 details

Gene Information

• Locus tag: Vapar_0696
• ID: 7974659
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 754958
• End bp: 756946
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644791295
• Product: cytochrome c oxidase, subunit I
• Protein accession: YP_002942616
• Protein GI: 239813706
• COG category: [C] Energy production and conversion
• COG ID: [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1
• TIGRFAM ID: [TIGR02891] cytochrome c oxidase, subunit I

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGACG AACGCGCCAT GCAGCAGCAA CCCGGCCGCA CCCCCGCCCC GCCGCACCTG 
AAGGACGGTC CCGGCCCCGG CTCGCCCGAA GCCGCCGCGC TGGACGCCAC CTGGCGCGAT 
CCGCCCGGGC TGCTCGGCTG GCTGGCCGCC GTCAACCACA AGGCGATCGC GCGCCGCTTC 
ATCGTCACCA CCTTCTGCTT CTTCGTGGCG GGCGGGCTGC TTGCGTTCGT GATGCGGCTG 
CAGCTCGCGC GGCCCGGCGC GCGGCTGGTC GGGCCCGATC TCTACAACCA GCTGTTCACG 
ATGCACGGCT CGACCATGAT GTTCCTCTTC GCCGTGCCGG TGATGCAGGC CGTGGCCGTG 
TATCTGCTGC CCCTGATGCT GGGCACGCGC AGCGTCGCCT TTCCGCGCCT GAACGCCTTC 
GCCTACTGGA TCTTCCTGTT CGGCGGGCTG ATGCTCTACG CGGTGTTCGC GCTGGGCGCC 
GCGCCCGACG TGGGCTGGTT CTCGTACGTG CCGCTCGCGG GGCCCGACTA TTCGCCCGGC 
AAGCGCACCG ACTTCTGGGC CCAGATGATC ACCTTCACCG AGCTGTCGGC GCTGCTGGAG 
GCCATCGTGG TGATCACCAC CGTGTTCAAG CTGCGCGCGC CGGGCATGGC GCTCAACCGC 
ATTCCGCTGT TCGCCTGGGC CATGCTGGTG ACGGCCTTCA TGGTGCTGTT CGCGATGCCC 
GCGGTGATGC TGGCGAGCAC CACGCTGATC ACGGACCGGC TGGTCGGCAC GCACTTCTAC 
AACCCGGCCG AGGGCGGCGA CGCGGTGCTC TGGCAGCACC TGTTCTGGTT CTTCGGCCAC 
CCCGAGGTCT ACCTGATCTT CCTGCCCGGC CTGGGCTTTC TCTCGGCCAT CATCCCGACC 
TTCGCGCGGC GGCCGATCTT CGGCTACACC GCCATGGTGC TGGCGCTGAT CGCCACCGCC 
TTCCTGGCCT TCGGGCTGTG GGTGCACCAC ATGTTCGCGG TCAACCTGCC GGAGCTCGGC 
AAGAGCTTCT TCACCGCGGC GAGCATGCTG ATCGCCATTC CCTCGGCCGT GCAGATCTTC 
TGCTGGATCG CCACGCTGTG CAGCGGCCGG CTCGACTTCA AGACGCCGCT GCTCTTCGCG 
CTCGGTTTCT TCTTCATCCT CGTGCTGGGC GGCCTGACCG GCATCATGCT GGCCTCGGTG 
CCGCTGGACC TGCAGGTGCA CGACAGCTAC TTCGTGGTGG CGCACCTGCA TTACGTGCTG 
ATCGGCGGCG CGGTGTTTCC GCTGTTCGGC GCCTTCTACT ACTGGTATCC CAAGATCACC 
GGCCGGCTCA TGAGCGAGCG CCTCGGGCGC TGGAACTTCT GGCTCTTCTT CGTCGGCTTC 
AACGTGACCT TCTTCCCGAT GCACCTGCTC GGCCTCCGGG GCATGCCGCG CCGGGTCTAC 
ACCTACCAGG CGGGCCTGGG CTGGGACACG CTGAACCTGG TCGCGACCCT CGGTTCCTGG 
ATCATTGCGC TGTCGGCGCT GCTGTTCGTG GTGAACGCGC TGCGCAGCCT GCGCCGCGGC 
GCGCCCGCGG GCCCCAACCC CTGGGGCGCC GGCACGCTCG AATGGGCCAC CGAGTCGCCG 
CCGCCGCCAT GCAACTTCCA CGCGATTCCG GTGGTGCACG GCCGCGATCC GCTCTGGGAG 
CCGCCGCGCG CCGCGGCCGA CGGCGGGCCA CCGCCCTTCA CGCACGTGGG CGGTCTCGCG 
GCCCATACGC GCGAACTGCT CGCCACCACC GTGCTCGATG CGCGGCCCGA CCTGCGCGTC 
AACTTCCCCG ACCCGACCAT CTGGCCGCTG GTCAGCGCAC TGGCCGTCAC GGTGCTGTTC 
ATCGGCTCCA TCTTCACGCC ATGGGCCGTG GTGTGGGGCA GCATCCCGAT CGCGATCGCG 
CTCACGGCCT GGTTCTGGCC CCGGCGCGCG GAAACCGCGG TGCACCTTCG CCTGGAGCAG 
GGGCCATGA 

 

Protein sequence

MNDERAMQQQ PGRTPAPPHL KDGPGPGSPE AAALDATWRD PPGLLGWLAA VNHKAIARRF 
IVTTFCFFVA GGLLAFVMRL QLARPGARLV GPDLYNQLFT MHGSTMMFLF AVPVMQAVAV 
YLLPLMLGTR SVAFPRLNAF AYWIFLFGGL MLYAVFALGA APDVGWFSYV PLAGPDYSPG 
KRTDFWAQMI TFTELSALLE AIVVITTVFK LRAPGMALNR IPLFAWAMLV TAFMVLFAMP 
AVMLASTTLI TDRLVGTHFY NPAEGGDAVL WQHLFWFFGH PEVYLIFLPG LGFLSAIIPT 
FARRPIFGYT AMVLALIATA FLAFGLWVHH MFAVNLPELG KSFFTAASML IAIPSAVQIF 
CWIATLCSGR LDFKTPLLFA LGFFFILVLG GLTGIMLASV PLDLQVHDSY FVVAHLHYVL 
IGGAVFPLFG AFYYWYPKIT GRLMSERLGR WNFWLFFVGF NVTFFPMHLL GLRGMPRRVY 
TYQAGLGWDT LNLVATLGSW IIALSALLFV VNALRSLRRG APAGPNPWGA GTLEWATESP 
PPPCNFHAIP VVHGRDPLWE PPRAAADGGP PPFTHVGGLA AHTRELLATT VLDARPDLRV 
NFPDPTIWPL VSALAVTVLF IGSIFTPWAV VWGSIPIAIA LTAWFWPRRA ETAVHLRLEQ 
GP