| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0682 |
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| Symbol | |
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| ID | 7974645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 742860 |
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| End bp | 744473 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791281 |
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| Product | Integrase catalytic region |
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| Protein accession | YP_002942602 |
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| Protein GI | 239813692 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4584] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACGTCT TGAAGCCACA TCTGCAAACC ACCATCTGGA CGCTGCTCAA GGGCGGCGCC
ACCCAGCGCG AGATCGAACG CATCACCGGC ATTTCGCGCC ACACCATCCG GACCTACCAG
CAGCGCTTCG CCGCCGATCC GGCAAACTGC CCCGGGGTGG CCACCGACCC TCCCAGTCAA
ACTGCTCCAC CCTGGCCACC GACTTCCGGG CCGGTAGCGC CGCCGCTGGC CACCTCCAAG
TGCGAACCCC ACCGCGCCTT CATCGACGCC CAGTTGCGCC TGGGCCGCAA CGCCACCGCC
ATCTACCAGG ACCTGGTCGA CCTGCACGGC TTTGACGGCG CCTACAACTC GGTCAAACGG
TTCTGCGCCC AGCTTCGCCA CAAGGAGCCC GAGCAGTTTG ATCGTCTGAG CTTTGCGCCC
GGCGAGGAGA TGCAGGTCGA CTACGGTGAA GGCGCCCCCA CGCGGATGCC GGGCACCGAG
CGCTGGCGCA AACCCCGCCT GTTCGTGGCC ACGCTGCGCT ACTCGCGGCG TAGCTTCCGC
CGCGTGGTCT GGAAATCCAG CCAGCAAGTC TGGGCTGAGT TGCACGAGCA GGCCTGGGCC
TACTTCGGCG GGTCCACCCA CTACGTCGTC CTCGACAACC TCAAGGAAGG CGTCTTGAAG
CCCGACCTGT ACGAGCCCGC GCTCAATCCG GTCTACGCGG CCACACTCGC TCATTACGAG
GTGGTGGCCG ACCCGGCCCG GGTCCGGGAT CCGAATCGCA AGGGGACGGT GGAGAACGCG
ATCCAACACA CCCAGGCCAC CGCGCTCAAG GGCCGGCGCT TTGAGACCAT CGAAGAGCAG
AACGCCTTCC TGGAACACTG GGAGTCCAGG TGGGCCGCCT CGCGCATCCA CGGCGCCGAG
CGGCGTCAGG TGCAGGCCAT GTTCGAGGAG GAGCGCGCCC ACCTGCAGCC GCTGCCGGCC
ACGCGCATGC AGTACTTCAC CGAGGTGCAG CGCACGGTCT GCGACGACAG CTGCGTGCGC
ATCGACCACA GCAGCTACGC CGCTCGTCCG GCCCCGATTG GCTCCAAGGT GCTGGTGCGG
CTGTTCGAGC GGCGCATCGA GATCCGTGAG CTGCGCACGC AAGCCTTGCT GCGCACCCAC
GAGCGGGTCG ATCGCCCCGG CAGCGTGGTG CTGCCCATGG CCGAGCGGGT GTTCAACCCC
TCGCGCGAGA CGCGCTACAT CCTGGCCCAG GCCCGAGCCA TCGGGGCGCA GGCCTCGCGG
CTGTGCCAGA TGCTGTTCGC CATCGAGGGG CGCGTGGGCC AGCGCAAGCT GTGGGGCATC
GTCAACCTGG CCAAGCGCTA CCCGAACCAC TTTATCGACG CGGCCTGTGC GGGCGCCATG
GAGCAAGGCG TGCACAGCTA CCGCCACGTC AAGGCGCTCA CCGAGCGGCT GGTGGCCGAC
GCCCTGGCCG CCCTGCAGGC CGGCACGCCG ACACAGTCGG CGTCAACGCT CACCCAGCAG
CACGCGCTCA TCCGCAGCGC CGACGAATAC GGCGATCTGT TCGCCCACGC CGCCACCGCC
ACCTCGGGCG GCACAACCTC TCCCACCCCC ACCACTGAGA TCGCCCAGCC ATGA
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| Protein sequence | MNVLKPHLQT TIWTLLKGGA TQREIERITG ISRHTIRTYQ QRFAADPANC PGVATDPPSQ
TAPPWPPTSG PVAPPLATSK CEPHRAFIDA QLRLGRNATA IYQDLVDLHG FDGAYNSVKR
FCAQLRHKEP EQFDRLSFAP GEEMQVDYGE GAPTRMPGTE RWRKPRLFVA TLRYSRRSFR
RVVWKSSQQV WAELHEQAWA YFGGSTHYVV LDNLKEGVLK PDLYEPALNP VYAATLAHYE
VVADPARVRD PNRKGTVENA IQHTQATALK GRRFETIEEQ NAFLEHWESR WAASRIHGAE
RRQVQAMFEE ERAHLQPLPA TRMQYFTEVQ RTVCDDSCVR IDHSSYAARP APIGSKVLVR
LFERRIEIRE LRTQALLRTH ERVDRPGSVV LPMAERVFNP SRETRYILAQ ARAIGAQASR
LCQMLFAIEG RVGQRKLWGI VNLAKRYPNH FIDAACAGAM EQGVHSYRHV KALTERLVAD
ALAALQAGTP TQSASTLTQQ HALIRSADEY GDLFAHAATA TSGGTTSPTP TTEIAQP
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