| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0654 |
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| Symbol | |
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| ID | 7974617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 712113 |
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| End bp | 713054 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791257 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002942578 |
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| Protein GI | 239813668 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.770654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCTCG TCACCTACCG CGCCCACGTA GCCGCCGTCG CCCGCCTGGG CGCCATCGTC
GAAGACCTCG TGGTCGATCT GCAGCGCCTG GGCGCGCACG CCGGCCAGCC TGTCCCCGAC
GACATGCTGG CCTTCATCGA GCTCGGCCCC CACGCCGTGG TCACCACCAC CGCGCTGCTC
AAGCAGCACG CGGGCCAATG GCCGCTGGGC GTCACCGTGC CGCTGGCCAA CGTCAAGCTG
CTCGCGCCCA TCCCGCGACC GCGCAAGAAC ATCTTCGGCA TCGGCCTGAA CTACGTGGAG
CACGTGGCCG AGTCCAGCCG CACGCTGGAC ACCAGCAAGG AGCTGCCCAA GCAGCCCGTG
ATCTTCTCCA AGCCGCCCAC CACCGTCATC GGCCCGGGCG ATGCGATCGA GCACAACGCG
GCCATCACCC AACAGATGGA CTGGGAGGTG GAGCTCGCGG TCATCGTGGG CCGCCGCGCC
AAGGGCGTGG ACAAAGCCAG CGCGCTGGAG CACGTGTTCG GCTACACCGT GCTCAACGAC
ATCAGCGCGC GGGACAACCG CCGCGCTGGC CAGTGGATTT ACTCCAAGGG CCAGGACACC
TACGCGCCCT TGGGCCCGGT CATCGTCACG GCCGACGAGA TCGCCGACCC GCACGCGCTG
AACCTGAGCC TCAAGGTCAA CGGCGTGGAG AAGCAGAAGT CCAACACGCG CCACCTGCTG
TTCAACATCA ACCACCTCAT CGCCGACATT AGCGCGGGCA TCACGCTCGA GCCCGGCGAC
ATCATCGCCA CCGGCACGCC CGAGGGCGTG GGCGCGGGCC GCAGCCCCCA GGAGTGGATG
TGGCCGGGCG ACGTGGTCGA GGCCACGGTC GAGGGCATCG GTACGCTGCG CAACCCCATC
GTCGCGGTCG GCGACGAGCC GCGCGCGCCC CGCAAGGCCT GA
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| Protein sequence | MRLVTYRAHV AAVARLGAIV EDLVVDLQRL GAHAGQPVPD DMLAFIELGP HAVVTTTALL
KQHAGQWPLG VTVPLANVKL LAPIPRPRKN IFGIGLNYVE HVAESSRTLD TSKELPKQPV
IFSKPPTTVI GPGDAIEHNA AITQQMDWEV ELAVIVGRRA KGVDKASALE HVFGYTVLND
ISARDNRRAG QWIYSKGQDT YAPLGPVIVT ADEIADPHAL NLSLKVNGVE KQKSNTRHLL
FNINHLIADI SAGITLEPGD IIATGTPEGV GAGRSPQEWM WPGDVVEATV EGIGTLRNPI
VAVGDEPRAP RKA
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