| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0653 |
|---|
| Symbol | |
|---|
| ID | 7974616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 711078 |
|---|
| End bp | 712097 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644791256 |
|---|
| Product | Nitrilase |
|---|
| Protein accession | YP_002942577 |
|---|
| Protein GI | 239813667 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGC TACCCCACTT TAAGGCGGCC GCCGTGCAGA CGGCGCCCGT TTTCCTGGAC
ACCAACGCTA CCGTCGAGAA GGTCGTGCGT CTGATCGACG AGGCCGCCGA CCACGGCGCG
CAACTTGTGG CCTTCCCCGA GGTTTTTGTT TCGGCCTATC CGTACTGGAG CTGGATCGGC
AACCCAATAC AAGGCAGCCC CTGGTTCGAA AAGCTCGCGC GCTCGGCCAT CGAAATCCCC
GGTCCCGAGA TCACCGAGAT CGCCCAAGCG GCCGCGCGCC GCTGCGTCAA CGTGGTGGTG
GGCGTGAACG AGCGCAGCCG CTTCGGAGTG GGCACCATCT ACAACACGCT GGTCACCATC
GCCGACGACG GCCGCATCAT CGGGCGCCAC CGCAAGCTCG TGCCCACCTG GGCCGAGAAG
CTCACCTGGG CCCCGGGCGA TGCGTCCGCG CTGCGCGTGC ACCAGACCAG CATCGGCCCC
CTGGGCTCGC TAGCCTGCGG CGAGAACACC AACACCCTGG CCCGGTTCGC GCTGCTCGCG
CAAGGCGAAC TGGTGCATGT GGCCAGCTAC ATCTCGCTGC CTGTGGCACC GCCCGACTAC
GACATGGCCG ACGCCATCAA AGTGCGCGCG GCCGCCCACA GCTTCGAGGG CAAGGTCTTC
ACGCTGGTCT CGTGCTCCAC GGTGTCCGAA GAGATCATCT CCGCACTGGA GGGCGACTTC
CCGAACGCAC GCGAGCTGCT CACGCGCCGC AACAGCGCCT TCTCGGGCGT GCTCGGCCCC
GATGGCCGTG TGATCGGCCA GCCCCTGATC GACGGCGAGG GCATCGTCTA CGCCGACATC
GATCTGTCGC GCTGCATCCA GCCGCGCCAG ATGCACGACA TCACGGGCCA CTACAACCGC
TTCGACGTCT TCGACCTGCG GGTCAACCGG CGTCCCTTGC AGGCTGCGCG CTTCGACGAA
GAATTCGAGT CCATCCCGCT CGAACCCAGC CCTGAACCCC ACCAGGAGTC CCTCGCATGA
|
|---|
| Protein sequence | MLKLPHFKAA AVQTAPVFLD TNATVEKVVR LIDEAADHGA QLVAFPEVFV SAYPYWSWIG
NPIQGSPWFE KLARSAIEIP GPEITEIAQA AARRCVNVVV GVNERSRFGV GTIYNTLVTI
ADDGRIIGRH RKLVPTWAEK LTWAPGDASA LRVHQTSIGP LGSLACGENT NTLARFALLA
QGELVHVASY ISLPVAPPDY DMADAIKVRA AAHSFEGKVF TLVSCSTVSE EIISALEGDF
PNARELLTRR NSAFSGVLGP DGRVIGQPLI DGEGIVYADI DLSRCIQPRQ MHDITGHYNR
FDVFDLRVNR RPLQAARFDE EFESIPLEPS PEPHQESLA
|
|---|
| |