| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0643 |
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| Symbol | |
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| ID | 7973628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 700367 |
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| End bp | 701554 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791249 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942570 |
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| Protein GI | 239813660 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTTCGC ACCCAAGTCC CAGCCGGCCG CTGGCCGATG CGCTTCCCGC CGACCCCGCG
GCAACTGCCC AGGATGTGGT GGTCGGCGCA TCCATTCCCC TGTCGGGCCC GCTCGCAGGG
TTCGGCATGT ACCAGCGCTG GGGTTATGAG ACGGCCGTCA AGGACCTGAA CCGGGTCGGC
GGCATCAGGA TCGATGAGCT GCAGCGAAAG ATCAGGCTGA TCATTCGCGA TGACCTGAGC
GATCCGAGCG TCACGGCCGA CAACACGGAC CGCCTGATCG CCCGTGACGG CGCGGTGGCC
ATGCTCGGCT CTTGCACACC GCCGCTTGTC AATGCCGGTG CGAGCGTTGC GGACCAACGC
AAGGTGCCCT TGGTTACGGG TTGCAATCCG CTGGGGGTGT TCAAAGCGGC CAGGCAGTGG
CAATACGCAT GGAACATCTT CTTCGATGAA CGCGAGCTGT CGTCGGTTCT GTTCCGGATG
ATGGCCGACA TGGGCCTCGT GTCCAACAAG AAAGTCGCCA TACTCACGGA CCACGGTCCT
CACGAATCGC ATCTGGCCGG TCAGCTTTGG CCGGCCCAGG CCGCCAGCGG GGGCTACACC
GTCGTCCACA ACGCCGCGTT GCCTGCCGAA CCACAGCAGC TCGTTGCCTT GATCGACCAG
GTCCGATTGA CCGGGGCGGA CATCGTGCTG GTCGATGCCA TCCCGCCGCG GGCCATTGCC
CTGCGCCAGC AGATGGGCAG CGCGGGCTTT GCGCCCCGGT TTCTCGTCAT CGAGAAGGGG
GGCGAGCCCG AATTCTTCGC GCAGGCCACC GGCCCCTTGT CCGAAGGGGT TCTCGTCAGC
GGCTACTGGG ATGCGAGCTT TCCTTACCCC GGGGCCATGC AGCTCGGCCA GCGCTTCGCG
GCCGAGACAC AAGGAACGCC AGGCGCGCAA ATCGCGAACT CGCACGCCGT AGCCCAGGTG
CTGCTCGATG CGATTGCGCA AGCGGGTTCG CTCGATGCGG ACAAGATCAA CGCCGCGATC
GCGGCGACCG ACAAATCCTA TGTCGTGGGG CCGGTGAAGT TCGCCGCGGA CCACACCTCC
CCCATCCCCC TCACTATGAC GCAATGGCAA GGCCGCCGCG CACGCGTCGT CTGGCCGAGC
GATCGCGCCA ATGGCCAGCT GATCGTCGGA CTGCCATCCG TGCCTTAG
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| Protein sequence | MPSHPSPSRP LADALPADPA ATAQDVVVGA SIPLSGPLAG FGMYQRWGYE TAVKDLNRVG
GIRIDELQRK IRLIIRDDLS DPSVTADNTD RLIARDGAVA MLGSCTPPLV NAGASVADQR
KVPLVTGCNP LGVFKAARQW QYAWNIFFDE RELSSVLFRM MADMGLVSNK KVAILTDHGP
HESHLAGQLW PAQAASGGYT VVHNAALPAE PQQLVALIDQ VRLTGADIVL VDAIPPRAIA
LRQQMGSAGF APRFLVIEKG GEPEFFAQAT GPLSEGVLVS GYWDASFPYP GAMQLGQRFA
AETQGTPGAQ IANSHAVAQV LLDAIAQAGS LDADKINAAI AATDKSYVVG PVKFAADHTS
PIPLTMTQWQ GRRARVVWPS DRANGQLIVG LPSVP
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