| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0641 |
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| Symbol | |
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| ID | 7973626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 698210 |
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| End bp | 699379 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644791247 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942568 |
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| Protein GI | 239813658 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.474288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGAC TGCTCACTGG CATCGCGCTC GTCGCGGCCA CCGTGTGGAT CCCCATCGCG
AGTGCAAGCG AGGCGCTGAA GATTGGCTTC CTGACCACGC TCTCGGGTCA GGGCGCGGCG
ATCGGACAAG ACATCAAAGA CGGCTTCGCG CTGGGTGTCA AACACAGCGG CGATCGATTG
GGCGGCGTTC CCCTGGAGAT CCAGTACGTG GACGACCAGC TCAGTCCGGA GAGCGCTCGC
CAGACCGCCG ACCGCTTCAT CAAGTTGAAC AAGGTCGACA TCGTCACCGG CGTGGTTTAC
GGAAGCGTCC TGATTCCGAT CCTGCCCGCC ATTCTCGCCA GCGACACCGT GTACATCAGC
ACCAACCCCG GCCCGGCGGA TTACGCGGGC GCCAAGTGCA ACAAGAACCT CTTCGTGGCG
GCGCTACAAA ACGAAGACAT CCCGCAAGCC ATGGGGCGTT ATGCGGCCTC CAAGTCGTAT
AAACGGGTCG CCTTGATTGC GGCCAACTAT CCGGGCGGGC GCGAGGCCAT CGTGGGCTTC
AAGCGCCAGT TCAAGGACGC GGCGGTCGAA GAGATCTACA CAAAGCTGGG TCAACTCGAC
TATGCGTCCG AGATAGTCAC CTTGCGTGAA TCCAAGCCTG AAGCGATCTT CTTCATGCTG
CCTGGCGCCA TGGGTATCAA CTTCATCAAG CAGTTCGAAG CGGCGGGCCT GACCAAGCAG
ATTGCCCTGT TGGCCCCGGG TTACTCCGCC GACGAAGACA CGATTCGGGC GGTCGGCGAT
CCCATGGTCG GGGTGTTCAA TGCCTCGCAG TGGGCCGCGG ACCTCCCGGG CGCGCTGAAC
CAGAAGTTCG TCGCGGACTT CACGAAGACC TATGGTCGTC CGCCGACCAT GAACGCCTCG
CAAGGCTACG ACACCGCCTT GCTCATCGAC AACGCCGTGC GCAAAACTGG CGGCAAGGTT
CGCGATCGCG AAGCGCTGCG GCAGGCGCTT CGCAAGGCGG AGTTCCAGTC TCTGCGCGGT
CCGTTCCGCT TCAACACGAA CCAGTTTCCG ATCCACACGC TGTACTTGCG CGTGGTGCAG
AAAGACGCGT CGGGAAAAAT CGCCAATAAG CTGGTGGGCG AACTGCTCCC AAACCATGCC
GATCCTTATG CGGCGGAATG CAAGCTGTGA
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| Protein sequence | MNRLLTGIAL VAATVWIPIA SASEALKIGF LTTLSGQGAA IGQDIKDGFA LGVKHSGDRL
GGVPLEIQYV DDQLSPESAR QTADRFIKLN KVDIVTGVVY GSVLIPILPA ILASDTVYIS
TNPGPADYAG AKCNKNLFVA ALQNEDIPQA MGRYAASKSY KRVALIAANY PGGREAIVGF
KRQFKDAAVE EIYTKLGQLD YASEIVTLRE SKPEAIFFML PGAMGINFIK QFEAAGLTKQ
IALLAPGYSA DEDTIRAVGD PMVGVFNASQ WAADLPGALN QKFVADFTKT YGRPPTMNAS
QGYDTALLID NAVRKTGGKV RDREALRQAL RKAEFQSLRG PFRFNTNQFP IHTLYLRVVQ
KDASGKIANK LVGELLPNHA DPYAAECKL
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