Gene Vapar_0630 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0630 
Symbol 
ID7973615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp686851 
End bp687912 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content67% 
IMG OID644791237 
ProductRieske (2Fe-2S) domain protein 
Protein accessionYP_002942558 
Protein GI239813648 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.494266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACCG ACGCCTCTCC CTCTCCCTAT GTGCACAACG CCTGGTACGT CGCGGCCTGG 
GCGAAGGACC TCGTGCACGC GATGCGCGCG ATCACCATCA TGGACCGGCC CGTGCTGCTG
TACCGTACCG AGGACGGACG ACCGATCGCG CTGGAGGACC GCTGCTGTCA CCGGCGTGTC
CCGCTGTCGC GCGGAACCCT GATCGGCGAC ACCGTGCAGT GCGGCTACCA CGGCTTCACC
TTCGATTGTT CGGGCCAGTG CATCGCCATT CCTAACCAGG AGCAGATCCC GCCGCGTGCG
CGCGTGAAGG GCTACCCCGT ATGCGAGATG CACCACCTGG TCTGGATCTG GATGGGCGAC
CCGGCCCGGG CCGACGAAGC GCTGGTGCCG GACTTCTCGG TGCTGAGCGA CCCGCGCCAT
GCGTGGGAGC GCGACTACAT GCACGCCAAG GGCAACTACC GGCTTATCGT TGACAACCTG
AACGACCTGA GCCACCTGAG CTTCGTGCAC AGCTCCACCA TCGGCAACGC GGCCACAGCG
CTCGCGGAGC TGGAGGTCAG CGACGGCGAG CAGGGCGTCA CCCAGACGCG ATGGATGATC
AACACGCCGC CGCCGCCCAC GTACCAGCGA CTCGCGGGCT TCGAGGGCCC CATCGACCGC
TGGCAGGTCA TCGCCTTCCT GCCGCCGACG ACGGTGCGCA TCCGCACCGG CGGGCGCGCG
CGCAGTAACG GCGAGCGCAA CTTCGACGGC GACGATACCA TCGGCATGGT CGCGCTGCAC
GCCATCACGC CCGAGACGGC CACCACCAGC CACTACTTCT GGGCGCAGAC GCACGACTTC
CGCACCGATG AACCCGCGGT GACGCAGAGC CTGTTCCAGG AAATCAAGAA GGCCTTCCAC
GAAGACCTCG AAATCTTCGC GCTGCAGCAG GCCGCGATCC AGAACGACCC CAACGGCGAG
GAGATTAGCT GCCGTGCCGA TCGCGCACAG ATCGCCGTGC GCCGGCACAT TCAGCGCCTG
CTGCAACAGG AGAACAGCGG CGCGCTCGCC AGGGAAGGCT GA
 
Protein sequence
MNTDASPSPY VHNAWYVAAW AKDLVHAMRA ITIMDRPVLL YRTEDGRPIA LEDRCCHRRV 
PLSRGTLIGD TVQCGYHGFT FDCSGQCIAI PNQEQIPPRA RVKGYPVCEM HHLVWIWMGD
PARADEALVP DFSVLSDPRH AWERDYMHAK GNYRLIVDNL NDLSHLSFVH SSTIGNAATA
LAELEVSDGE QGVTQTRWMI NTPPPPTYQR LAGFEGPIDR WQVIAFLPPT TVRIRTGGRA
RSNGERNFDG DDTIGMVALH AITPETATTS HYFWAQTHDF RTDEPAVTQS LFQEIKKAFH
EDLEIFALQQ AAIQNDPNGE EISCRADRAQ IAVRRHIQRL LQQENSGALA REG