| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0629 |
|---|
| Symbol | |
|---|
| ID | 7973614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 685578 |
|---|
| End bp | 686642 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791236 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002942557 |
|---|
| Protein GI | 239813647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.308192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTG CCTTTGCCCC AGCCCCCACG GCCCTCGCGA GCGCGCGCTC GCCCGCCCAG
CTCGATCTCA CAACGCTCTA CGAGCGCTGC GTGTTCCGTT CCGCGGTGCG CAGCCGCTCC
CACCAGTCGC TGCGCGACTC GCTCAACGAC CACGAGGTGC AATGGGGCGC CGGCGATGCC
GACGCCGTCA TGTGGAGCGC CGCCACGCCG CGCCTGCAGC TCATGGTGTT GCGCTACGGC
TCCGAGGTCG AGATCCGGCC GCGCCCCTTC GAGGATTTCG GCCTGGTGCA GATGCCGCTG
CGCGGCTCGA TGCAGGTGGA GTCCGCGGGC GGCCGCCACG ACGTGGGCCC GGGCCAGGTC
GCGGTGCTGT CCTCGCGCGA CCCGCTCACG CTGCGCTGGA GCGAAAGCTG CGAGCAGATC
ATCGTGCGCA TGCCGCATTC GCTGCTGCGT AGCGGCGCCT CGAGCATCCG CAGCCCGGGG
CGCGCGCCCG ACGGGCAGCC GGTGTTCGTG CTGGAGAGCG AAGCGGCGGG GCAATGGGGG
GCGCTCCTGC AATCGCTGCT GAACACCTTG CCGGCCAGCG ACGCCGTTGA CGGCGCGGCA
TCGCCCTTGT GTGACCCCGC GTGGATACAC CACCTCGAAG ACGGCATGGC GCTGTTCACC
ACGCTGCACA TGCGCCAGCG TGCGCGCGAG GGCGTGTCCA CCGAGCCGGG TCCGGCGGCG
CCTGGCGCCT CAGGGGGCTC CTCGGCGCGC CTTCAGGCCG CCGAGCGCTG GGTGCGCACG
CGGCTGTGCG CACCGCTTGC GCTGGAAGAC CTGGCGCGCG CGGCCGGCGT GAGCTCGCGC
ACCTTCTACA TGGACTGCAT GCGCCAACTG GGCGTGGGTC CCATGGCCTG GCTGCGCGAC
CTGCGGCTCG ACAGCGCGCG GCGGCAACTG CTCGCCAACC CCGGCCGCAA CGTCACCGAC
GTGGCCACCG ATTGCGGCTT CGGGCACCTG GGGCGTTTCT CGGCCTATTA CCAGCGCCGC
TTCGGCGAAC TGCCTCGCGA CACTGTGGCA CGCGCGCTGC GCTAG
|
|---|
| Protein sequence | MTLAFAPAPT ALASARSPAQ LDLTTLYERC VFRSAVRSRS HQSLRDSLND HEVQWGAGDA
DAVMWSAATP RLQLMVLRYG SEVEIRPRPF EDFGLVQMPL RGSMQVESAG GRHDVGPGQV
AVLSSRDPLT LRWSESCEQI IVRMPHSLLR SGASSIRSPG RAPDGQPVFV LESEAAGQWG
ALLQSLLNTL PASDAVDGAA SPLCDPAWIH HLEDGMALFT TLHMRQRARE GVSTEPGPAA
PGASGGSSAR LQAAERWVRT RLCAPLALED LARAAGVSSR TFYMDCMRQL GVGPMAWLRD
LRLDSARRQL LANPGRNVTD VATDCGFGHL GRFSAYYQRR FGELPRDTVA RALR
|
|---|
| |