| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0627 |
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| Symbol | |
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| ID | 7973612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 683553 |
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| End bp | 684350 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791234 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002942555 |
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| Protein GI | 239813645 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.518617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAA GGCTGAACGG CAAGGTTGCC ATCGTCACGG GCGCCACCCA GGGCCTCGGC
GCCGACATCG CCCGCGCCCT GGCGCACGAG GGTGCGCAAC GTGTCTTCAT CGTGGGCCGC
GGCCTGCAGG CAGGCACGGC CGTGGCCGCC GAGATCGGCG CGGCGGCCAC CGCGATCGAG
GCCGACATCA CCGACGACCA GGCGATCGAG CGCTGTGTGG CGCAGGCCCT GGCCGTCAAC
GGCCACATCG ACATCCTGGT GAACTGCGCC TGCATCTACG ACGACGCCGG CCTGGCCTCC
AGCCGCGCGC AATGGCACGC CACACTGGAC GTCAACCTGG TGTCGGCGGC AGTGTTCACG
CAGAAGGTCG AGCCGCACAT GGGCCGTGGC GCCGTGGTGG TCAACCTGGG CAGCGTAGGC
GGCAAGTTCG GCACGGCCAA CCGCGCCATC TACCCGGCCT CCAAGGCGGC CCTGATCCAG
ATTACGCGCA ACTTCGCCGT CACGCTGGCG CCGCGCGGCA TCCGCGTACT GTCAGTGTCG
CCGGCCTGGA CCTGGTCGCC CTCGCTTGAG CGCATGGCGC GCGGTTCGCG CAGTATCGCC
GACCGCGTGG GCGGCATCAC GCACCCGCTT GGCCGCGTGG GCGATGGCGC CGAGGTGGGC
CGGGTCGTGG CCTTCGCTGC CAGCGACGAG GCCTCGTGGA TCACGGGCAC CGACATCGCG
GTGGATGGCG GCTTCTCCAG CCTGGGCCCG GACCAGGGCG CCCCGGCCCG CGACTGGTTC
GAAGGCTCGG GGGGCTGA
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| Protein sequence | MTQRLNGKVA IVTGATQGLG ADIARALAHE GAQRVFIVGR GLQAGTAVAA EIGAAATAIE
ADITDDQAIE RCVAQALAVN GHIDILVNCA CIYDDAGLAS SRAQWHATLD VNLVSAAVFT
QKVEPHMGRG AVVVNLGSVG GKFGTANRAI YPASKAALIQ ITRNFAVTLA PRGIRVLSVS
PAWTWSPSLE RMARGSRSIA DRVGGITHPL GRVGDGAEVG RVVAFAASDE ASWITGTDIA
VDGGFSSLGP DQGAPARDWF EGSGG
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