| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0616 |
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| Symbol | |
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| ID | 7973601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 673818 |
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| End bp | 674720 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791223 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002942544 |
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| Protein GI | 239813634 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATGA AGCTCGGAAC CGTACGAGCC CAAGGGGCTG AACGTGTCGC CTGCCTGCTC
GATGCACAGG GCGGGGTGCT GCTGCCGCCC GACATGGGCG ATCTCGTGGC CATCATCGAA
GGCGGCAGCT CGGCGATGCT GAATCTGCAG GCTTGGGTGC GCTTGGGCAA AGCCGAGCGC
TTCGCGCTGG ACCAGGTCGA AGTGCTGGCG CCGATCCGGC GCTTCCACCG TGACGTGCTC
TGCACGGGCT GGAACTACTG GGACCACTTT CACGAGAGCG AAGGCAAGCG CGAGGGCCAA
GACGTGCCCA AGCCCGACGC GCCGACGTTC TTCACCAAGG GCCCCGATAC TGTGATCGGC
CCGACGCAGG CCATCGCCTT CGACCCGGCC CTCTCGGCCA AGTGGGACTA CGAGGCCGAG
ATCGTCGTCG TCATCGGCCG CACGGGCCGC AGCATCCCGC AGGACAAGGC CATGGACCAT
GTGTTCGGCT ACTGCCTGGC CAACGACGTG TCGCAGCGCG ATCTACAGCG CCGCCACGGC
GGCCAGTGGC TCAAGGGCAA GAGCATCGAC GGCACCATGC CCCTGGGACC GTGGATCGTG
CCGCGCGACC AAGTGGATCT GTCGGCGGTG AGCCTGGAAC TCGAGCTCAA TGGCACTCGC
ATGCAGCATG CCTCGGCAGC CCAGATGGCC TTTAGCGTGG CGCAGCTCAT CAGCGAACTG
TCCTTCGGCA TGACCCTCAG GGCGGGAGAC ATCCTCCTCA CGGGCACGCC CAGCGGCATC
GGCAACGCGC GAACGCCGCC CGTCTTCCTG AAGGCCGGCG ACGAACTCGT GGTGCGCGCC
ACCGGCCTCG GTGAGCTACG CAATACCATG CGCCCGGTGG CTCTCTCCAC CTATTCGACC
TGA
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| Protein sequence | MNMKLGTVRA QGAERVACLL DAQGGVLLPP DMGDLVAIIE GGSSAMLNLQ AWVRLGKAER
FALDQVEVLA PIRRFHRDVL CTGWNYWDHF HESEGKREGQ DVPKPDAPTF FTKGPDTVIG
PTQAIAFDPA LSAKWDYEAE IVVVIGRTGR SIPQDKAMDH VFGYCLANDV SQRDLQRRHG
GQWLKGKSID GTMPLGPWIV PRDQVDLSAV SLELELNGTR MQHASAAQMA FSVAQLISEL
SFGMTLRAGD ILLTGTPSGI GNARTPPVFL KAGDELVVRA TGLGELRNTM RPVALSTYST
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