| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0586 |
|---|
| Symbol | rplJ |
|---|
| ID | 7973570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 639734 |
|---|
| End bp | 640267 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644791193 |
|---|
| Product | 50S ribosomal protein L10 |
|---|
| Protein accession | YP_002942515 |
|---|
| Protein GI | 239813605 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0244] Ribosomal protein L10 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTGA ATCGCAGTGA GAAAGAAGCG GTCATCAGTG ATGTGACCAG CCTCGCCGCT
AAAGCTCAAA CGCTCGTGAT GGCGGAATAC CGTGGCATCA CGGTGGCCGA TATGACCAAA
CTGCGCAGCG AAGCTCGCAG CAAGGGTGTG ACCCTCAGCG TGTTGAAGAA CACGCTGGCA
CGCCGTGCTG TGGCTGGTAG CGCATTTGAG ATCGTTGGCG ACCAGATGAC CGGCCCGCTG
ATCTATGGCT TTTCCGAAGA CGCAGTGGCC GCCGCCAAGG TGGTGGCCGA TTTCGCGAAG
ACCAACGACA AGTTGGTGAT TCGCGGCGGC GCATTCGGCG GCAAGGCCCT GGACGTGAAC
GGCGTGAAGC AACTGGCCAA CATCCCTTCC AAGGAAGTGC TGCTGGCGCA ATTGCTGGGC
TTGATGCAAT CCCCGATCTC TCGTACCGCC CGCGTGCTCG CGGCGCTGGC CGAGAAGCGC
GGTGGTGGCG AAGCTGCACC CGCCGACGCA CCGGCAGAAG CGCAGGCTGC TTGA
|
|---|
| Protein sequence | MSLNRSEKEA VISDVTSLAA KAQTLVMAEY RGITVADMTK LRSEARSKGV TLSVLKNTLA
RRAVAGSAFE IVGDQMTGPL IYGFSEDAVA AAKVVADFAK TNDKLVIRGG AFGGKALDVN
GVKQLANIPS KEVLLAQLLG LMQSPISRTA RVLAALAEKR GGGEAAPADA PAEAQAA
|
|---|
| |