| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0577 |
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| Symbol | |
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| ID | 7973557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 632006 |
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| End bp | 632665 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791180 |
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| Product | Lysine exporter protein (LYSE/YGGA) |
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| Protein accession | YP_002942506 |
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| Protein GI | 239813596 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCCGATC TCCCGCATCT GCTCGCTTTC ATCGCCGCCG GCTGGCTGCT GAACCTCACG
CCGGGGCCCG ACGTGCTCTA CATCGTTGCC AACTCGCTGC GCTCCGGCGT GCGCGCGGGC
ATCGTCGGCG GCTTCGGCAT CCTCACCGGC TGCTTCGTCC ACATCTTTGC GGCGGCGGTC
GGCGTCGGCA CGCTGCTGGC CACCTCGGCA GCGGCCTTCA CGGTGCTCAA GTACGTTGGC
GCGGCCTACC TGCTGTACCT GGGCGTGCGC ATGGTGTTCT CGCGCGCCAA GGCGCCGGCC
GATCTGCAGC AGGCGGCGGC CGCATCGGGC GAGCGCGGGC TCAAGGAGAT CTTCCTGGGC
GGCTTCTGGA CCAATGTGCT GAACCCCAAG GTCGCGTTGT TCTTCCTGGC CTTCGTGCCG
CAGTTCATCG CACCGGACGC CGGCAACAAG GGCCTGTACT TCGTGCTTCT GGGCGTGCTG
TTCAATTTCA ATTCCATTCC CGTCATCGTG GGATGGGCCG CATTCGCCGG CTGGATGGCG
CAGAGGAGCG CCGTGCAGAA GGGCATGCAC TGGCTCGACC GCGCGGCCGG CGTGCTGTTC
ATCGGCTTCG GCCTCAAGCT TGCATTCACG GACGCGCCGG CCGGCCGCGT CGGCCCCTGA
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| Protein sequence | MPDLPHLLAF IAAGWLLNLT PGPDVLYIVA NSLRSGVRAG IVGGFGILTG CFVHIFAAAV
GVGTLLATSA AAFTVLKYVG AAYLLYLGVR MVFSRAKAPA DLQQAAAASG ERGLKEIFLG
GFWTNVLNPK VALFFLAFVP QFIAPDAGNK GLYFVLLGVL FNFNSIPVIV GWAAFAGWMA
QRSAVQKGMH WLDRAAGVLF IGFGLKLAFT DAPAGRVGP
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