| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0571 |
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| Symbol | |
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| ID | 7972981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 626777 |
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| End bp | 627505 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791174 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_002942500 |
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| Protein GI | 239813590 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCTCCA TTCACTACGA CCTCGCGCGC TTCGATGCCG CCATCGTCGA CCTCGACGGC
ACCATGGTCG ACACCCTCGG CGATTTCGCG GTGTCGCTCA ACCACATGCT GGGCGACCTT
TCGCTGCCGC CGGTGGCACC GGCCGCCATC GAGAAGATGG TGGGCAAGGG ATCGGAGCAC
CTGATTCTTT CGGCGCTCGC GCACGTGATG TCATCCGGCA GCGCGGCGTC CGAGGGCGCG
GACGCGCAGG TGCTGCACGC GCGTGCGCAG GCGCTCTTCG ACCAGGCCTG GGAACGCTAC
CAGCATCACT ATCTCGCCAT CAACGGACAG CACTCGGCGG TGTACCCGGG CGTGGTCGAA
GGATTGAAGG CGCTGCGCTC GCGCGGCCTG CGCCTGGCCT GCCTCACCAA CAAGCCGACC
TCGTTCGCCA AGCCGCTGCT GGCGGCCAAG GGGCTCGACG GCTTCTTCGA CTTCGCGTTC
GGCGGCGATG CCTTCGCGCG CAAGAAGCCC GATCCGCTGC CGCTCCTGAA GACCTGCGAA
GCGCTGGGCA CCGCTCCCGC GCGCACGCTG ATGATCGGCG ACTCCAGCAA CGACGCCAGG
GCCGCGCGCG CCGCCGGCTG CCCGGTGGTG CTGGTCACCT ACGGCTACAA CCACGGCGAG
CCGGTGCGCG GCGTCGATGC CGACGGCTTC GTCGACTCGC TCGCCGAGAT CGACCGAAGC
GTTTCCTGA
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| Protein sequence | MTSIHYDLAR FDAAIVDLDG TMVDTLGDFA VSLNHMLGDL SLPPVAPAAI EKMVGKGSEH
LILSALAHVM SSGSAASEGA DAQVLHARAQ ALFDQAWERY QHHYLAINGQ HSAVYPGVVE
GLKALRSRGL RLACLTNKPT SFAKPLLAAK GLDGFFDFAF GGDAFARKKP DPLPLLKTCE
ALGTAPARTL MIGDSSNDAR AARAAGCPVV LVTYGYNHGE PVRGVDADGF VDSLAEIDRS
VS
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