| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0551 |
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| Symbol | |
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| ID | 7972961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 610742 |
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| End bp | 611773 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791154 |
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| Product | type VI secretion-associated protein, ImpA family |
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| Protein accession | YP_002942480 |
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| Protein GI | 239813570 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03363] type VI secretion-associated protein, ImpA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGACCA CCGAACTTGT CGAAGCCCTG CTCACGCCCA TCGGCGAGGC CTCGCCGTGC
GGCGACGATC TGGAGTACGA CGCGGCCTTT ACCGCGCTCA CCACCGCAGC GCAGGGCAAG
CCCGAGCAGC AGTTCGGCGA CACCGTCATC CCCGCGGTGG AGCCGGAGTG GCGCGAGGTG
GCCGAACAGT CCGATGCGAT CCTGCGCCGC AGCAAGGACG TGCGCGCCGC CGTGCTGCTG
CTGCGTGCTT CCACGCGGCT GCAGGGACTT GCCGGTTTCG TTGCCGGGCT CGAACTGCTC
ACCCGCCTGC TCGACAACTT CTGGGACGGC ATACATCCAA AGCTCGATGC CGAGGACGAC
AACGATCCCA CCATGCGCCT GAACGCGCTC GCGCCGCTCG GCGACGAGAC GATGGTCCTG
CGCGACCTGT ACGACGCGCA GGTGGGCGTG GCACCCGGCG TGGGCGCGAT CCGCGTGCGC
GACATCGCGG TAGCCAACAA CGCATTGAAT GCGGTGGGCG GCGAAGCCAC CTATTCGCCG
GCACAGATCC AGGGCGGCCT CGAGGCGCTC CATGCCGAGC GGCCCGAGCT GATCCAGGCC
GCCATCGGCG TGCCCGGCGG GGTCGAGAAG CTGCAGGCCC TGCTGGTGGA GCGCACCGGC
CGCTCCGACG CGATCGACCT CTCCCCGCTG CGCGCCATCG GCCGCATGCT GCAGAAGGCG
TGCAGCGCGG CCATCGGTGC GCCCGAAGAA GCCGGCACCG CCGAAGAGGC GCAAGGCGAT
GCGCCGCAGG CCGGCGGCGC GCCGCGGCCC GCTGCCATGC GCGGCGAGAT CCAGAGCCGG
CAGGACGCGC TGCAGATGCT GGACCGCGTG ATCCGCTTTC TCGAGCAGAC CGAGCCCGGC
AACCCCGCCC CGCTCCTGAT CGAGCGCGCC AAGAAGCTCA TCGGCGTGAG CTTTCTCGAA
ATCATGGCCA ACCTCGCGCC CGGCGCGCTG GACACGATCG AGACCGTGAC CGGCAAGCGT
CCGTCCGAGT AG
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| Protein sequence | MLTTELVEAL LTPIGEASPC GDDLEYDAAF TALTTAAQGK PEQQFGDTVI PAVEPEWREV
AEQSDAILRR SKDVRAAVLL LRASTRLQGL AGFVAGLELL TRLLDNFWDG IHPKLDAEDD
NDPTMRLNAL APLGDETMVL RDLYDAQVGV APGVGAIRVR DIAVANNALN AVGGEATYSP
AQIQGGLEAL HAERPELIQA AIGVPGGVEK LQALLVERTG RSDAIDLSPL RAIGRMLQKA
CSAAIGAPEE AGTAEEAQGD APQAGGAPRP AAMRGEIQSR QDALQMLDRV IRFLEQTEPG
NPAPLLIERA KKLIGVSFLE IMANLAPGAL DTIETVTGKR PSE
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