| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0549 |
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| Symbol | |
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| ID | 7972959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 608618 |
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| End bp | 610111 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791152 |
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| Product | type VI secretion protein, EvpB/VC_A0108 family |
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| Protein accession | YP_002942478 |
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| Protein GI | 239813568 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.618864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGAAG CACTCGAGCA GAGCGCACTC AAGGATGTCG CCTATGCGGG CAGCGATTTT
TCGTCGCTCC TGCAAAAGGA ATTCAAGCCG CGCAGCGACG AAGCCAAGAG CGCCGTCGAA
GCCGCGGTGC TCACGCTCGC GCAGCAGGCG CTGAGCAACA GTACCGTCAT CGGCAAGGAC
GTGACCAAGT CGATCCAGTC GATGATCGCC GCGATCGACG CCAAGCTGAC CGACCAGGTC
AACAAGATCA TCCACCACCC CGACTACCAG AAGCTCGAGA GTGCGTGGCG CGGCCTGCAC
TACATGGTGA ACAACACCGA GACCGACGAG CACCTGAAGA TCCGGGTGAT GGACATCTCG
AAGACGGACC TTGCCAAGAG CCTGAAGAAG TTCAAGGGCG CGGCCTGGGA CCAGAGCCCG
ATGTTCAAGA AGATCTACGA GCAGGAATAC GGCCAGTTCG GCGGCGAGCC CTTCGGCGCG
CTGGTGGGCG ACTACCACTT CGACCAGAGC CCGCCCGACA TCGAGCTGCT GGGCGAGATG
TCCAAGATCG CCGCCTCGGC GCATGCGCCC TTCATCACCG GCGCGAGCCC CAACCTGATG
CAGATGGAAT CGTGGCAGGA GCTCGCCAAC CCGCGCGACC TGACCAAGAT CTTTCTCACG
CCCGAGTACG CCGGCTGGCG GTCGCTGCGC GACTCCGACG ACGCCAAGTA CCTGGGCCTG
TGCATGCCGC GCTTCCTGGC GCGCACGCCC TACGGCGCCA ACACCAATCC GGTGGAGGAG
TTCGACTTCG AGGAAGACAC CGTCGGCGCC GACCACAGCA AGTACGCCTG GGCCAACGCA
GCCTATGCGA TGGCCACCAA CATCAACCGC TCCTACAAGC TCTACGGCTG GGGTTCGCGC
ATCCGCGGCA TCGAATCGGG CGGCGCGGTG GAGAACCTGC CGCTGCACAC CTTCCCGAGC
GACGACGGCG GCGTGGACCA GAAGTGCCCG ACCGAGATCG CCATCAGCGA CCGGCGCGAA
GCCGAGCTCT CGAAGGCCGG CCTGCTTTCG CTGATCCACC GCAAGAACTC CGACTTCGCG
GCCTTCATCG GTGCGCAGTC GCTGCACAAG CCGGCCGAGT ACGACGACCC GGACGCCACG
GCCAACGCCA ACCTGGCGGC GCGCCTGCCC TACCTCTTTG CCTGCAACCG CTTTGCGCAC
TACCTGAAGT GCATCGTGCG CGACAAGGTC GGCAGCTTCA AGGAGCGCGA CGACATGCAG
CGCTGGCTCA ACAAGTGGAT CATGAACTAC GTGGACGGCG ACCCCGTCAA CTCCTCCGAA
GAGACCAAGG CCAGGAAGCC CCTGGCCGCG GCCGAGGTGG TGGTGGAAGA GGTCGAGGGC
AACCCCGGCT ACTACACCTC CAAGTTCTTC CTGCGCCCGC ACTACCAGCT CGAAGGCCTC
ACGGTGTCGC TGCGGCTGGT GTCGAAGCTG CCCTCGGCCA AGGGCGGCAA GTAG
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| Protein sequence | MAEALEQSAL KDVAYAGSDF SSLLQKEFKP RSDEAKSAVE AAVLTLAQQA LSNSTVIGKD
VTKSIQSMIA AIDAKLTDQV NKIIHHPDYQ KLESAWRGLH YMVNNTETDE HLKIRVMDIS
KTDLAKSLKK FKGAAWDQSP MFKKIYEQEY GQFGGEPFGA LVGDYHFDQS PPDIELLGEM
SKIAASAHAP FITGASPNLM QMESWQELAN PRDLTKIFLT PEYAGWRSLR DSDDAKYLGL
CMPRFLARTP YGANTNPVEE FDFEEDTVGA DHSKYAWANA AYAMATNINR SYKLYGWGSR
IRGIESGGAV ENLPLHTFPS DDGGVDQKCP TEIAISDRRE AELSKAGLLS LIHRKNSDFA
AFIGAQSLHK PAEYDDPDAT ANANLAARLP YLFACNRFAH YLKCIVRDKV GSFKERDDMQ
RWLNKWIMNY VDGDPVNSSE ETKARKPLAA AEVVVEEVEG NPGYYTSKFF LRPHYQLEGL
TVSLRLVSKL PSAKGGK
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