| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0548 |
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| Symbol | |
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| ID | 7972958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 607989 |
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| End bp | 608471 |
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| Gene Length | 483 bp |
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| Protein Length | 160 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644791151 |
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| Product | protein of unknown function DUF796 |
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| Protein accession | YP_002942477 |
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| Protein GI | 239813567 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCAG ACATGTTTTT GAAGCTCGAG GGCGTCGACG GTGAATCCAA GGACGATTCG
CACAAGAAGG AGATCGACGT TCTCTCCTGG AGCTGGGGTG CCAGCCAATC GGGCACCGGC
CACGTGGGCG GCGGCTCGGG CGCAGGCAAG GTGAGCGTGC AAGACCTCTC GGTCACCAAG
TACGTGGACT CCTCCTCGCA CCTGCTGCTG CTCGACTGCT GCAATGGCCA GCACATCAAG
AAGGGCACGC TGGTGGTCCG CAAGGCCGGG GCCACGCCGC TCGAGTACAT CAAGCTCACG
ATGGAAGACA TCATCGTCAG CAACATCCAC ACCGGCGGCA GCGGCGGCGA AGACCGCCTG
ACCGAGACCA TCACGCTGAA CTTCTCGAAG TTCAAGTACG AGTACACGCC GCAGAAGGCC
GACGGTTCCG GCGACGGCAC CAAGGAAACC GGCTGGGACA TCGCCGCCAA CAAGAAGGTC
TGA
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| Protein sequence | MAADMFLKLE GVDGESKDDS HKKEIDVLSW SWGASQSGTG HVGGGSGAGK VSVQDLSVTK
YVDSSSHLLL LDCCNGQHIK KGTLVVRKAG ATPLEYIKLT MEDIIVSNIH TGGSGGEDRL
TETITLNFSK FKYEYTPQKA DGSGDGTKET GWDIAANKKV
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