Gene Vapar_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0541 
Symbol 
ID7972951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp601887 
End bp602639 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content62% 
IMG OID644791144 
ProductBeta-propeller repeat TECPR 
Protein accessionYP_002942470 
Protein GI239813560 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTGGA TGCCGGTCCG GCTGGCGCAG CTCGAACTTC CGCAACCATG TGTCTTCGCA 
CTCGGCGGCG ACGGAACCGT CGGTCTCGGC TACGGAGGGT ATTCGGAGGA GAGCATCAAC 
ACGACGGACA CCGGGCCTCG GGGACGAGGC CCGCTTCGTG TTCTCCGCGC GATCGCCGGG 
CGTTTGTACG CGGCCGGCAT GGGCAGACAG GTCTATCGAA GGGCGGATGC AGGTGTCTGG 
GAGGTGCTGG ACCCGCCAAA GGTGCCAGTT CCGGGCGAGA TCGACATATG TGGCTTCACG 
TCGATCGACG GCGTGGATGA AGACGAGATA TGGGCTGTCG GATATCGCGG TGAGATCTGG 
CGTGCAAGCG GCTTGCAATG GTCGGAGATG GCGAGTCCCA CCAACTTGAC GCTCCATGTC 
GTCAGGACTT TCAAGAAGCA CCTCGTGTTC GCAGCTGGAA AGATGGGGCT CGTTCTCGGT 
TTTGTGGATG ACGCGTGGCG CGTCCTTGCG CAGATACCAG GCGGTGAGGA CATCTGGGAT 
CTCGAATGGT TTGGCGGGCA ATTGTTTGCC GCTACCTCGA CGCGATTGTT CAAGCTCCTG 
CCCGACGCGA CGTTCGAAGA GGTTGCCGTT CCCGGGCTGA CTTCGTTTGG ATACCTTCAT 
GCCAACGATG GCGTTCTGTG GTCGTTCGGC ACGCTGCAGC TGGCCTGGAC GACCGATGCC 
ATTGTGTGGA CCGCGCAGAC CCCGACCCTG TGA
 
Protein sequence
MQWMPVRLAQ LELPQPCVFA LGGDGTVGLG YGGYSEESIN TTDTGPRGRG PLRVLRAIAG 
RLYAAGMGRQ VYRRADAGVW EVLDPPKVPV PGEIDICGFT SIDGVDEDEI WAVGYRGEIW 
RASGLQWSEM ASPTNLTLHV VRTFKKHLVF AAGKMGLVLG FVDDAWRVLA QIPGGEDIWD 
LEWFGGQLFA ATSTRLFKLL PDATFEEVAV PGLTSFGYLH ANDGVLWSFG TLQLAWTTDA 
IVWTAQTPTL