| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0536 |
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| Symbol | |
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| ID | 7972946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 595488 |
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| End bp | 597866 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791139 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002942465 |
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| Protein GI | 239813555 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATC ACGAGTTCCG CATCGAAAGC GATTCGCCCG CCAACGGCGA GCTGATGTTC
TGGCGCATCG TGGGCCATGA GGCGCTCGCG CGCTCGTCGA GCTACGAACT CACCGTGCTG
TCCAAGAACC ATGCGCTCGA TGCCAAGGAC ATCCTCGGCC GCGCCTTCGA CGTGGTCATC
CAGTTCCAGG ACAAGGACGG CGGCATGCAC GAGCGCCATT GCCAGGGCCA CGCCGTGCGC
TTCGAGCGCA CCGGCCACGT GGGACGGCAC TTCGAATACC GCATCGGCCT GCGCTCGTGG
TTCTGGCTTC TCACCAAGCG CATCAACTCG CGCATCCTGC AGGAAAAGAA GGTGCTCGAA
GTGCTCGACG CGGTCCTTGA AGACAGCCCG ATCAGGCGCT TCAAGAAGAC CAGGACCAGC
AACGTCATCG GCACCCACAA CCCGCGCCGC TACTGCGTGC AGCACCAGGA AAGCGACTAC
CAGTTCCTGT CGCGGCTGCT GGAAGACGAA GGCATCTACT ACTGGTTCGA CGCGCACGAT
GCGCCCGGCA CCATGCACCT GTCGGACGCC AGCGACATCG CGCACGACAA GCTGCCCGTG
GAGGGCACGC TGCGCCACAT GGCCACCGAC ACCACCGAGG CGCGCCACAA CGAGATCTCG
CGCTGGGTGA GCGCACGCCA GTTCGACACC GGCACCTACG CCTCGCGCGA CAGCGACTTC
AAGGCCATCA AGAAGAAGCT CGAGGCCGCG GGCGGCCAGC CCGACAAGCA CGAGCTGGCC
GAATTCGAGG CCTTCGAGTT TGCCGGCGGC TACTTCACGG GTGCGGATGC GGACGACAAG
GGCAAGCTGC GCGGCGAGGA GATCGCCGCG CGCCGCCAGC GCCACTGGGC GCTCACCACC
TGGCCCGACG TGGCGGCGGG GCGCAGCTTC ACCTTCGAGG GCGACCCCGA CGGCACGCGC
GATGGCGACT ACGTGATCGC CGCCTGCATC TTCGCGGCGA GCCACCCGGG CTACGAGAGC
ATTCCCCATG CCACGCCGAG GATGCCTATC GAGCAGGCGC TGCGCGAGGC GCTCGACGAC
GACGCCGTCA ATGCCCAGGC GCGGCCCGCA CTCGAGGCGC TGATCGCCGA CGCGCCCGCG
CTGCGCACCG ACCTGCAGGG CACCAGTGCC TTCCTGATCA CCGCGATTCC CGTCGACGTG
CCGTTCCGCC CGCCACGCCT CACGCCGCGC GTCGTCATGC CCGGGCCGCA ATCGGCCATC
GTGGTGGGGC CGGCCGGCGA AGAGATCCAC GCCGACGACT TCGGCCGCGT GAAAGTGCAC
TTCCACTGGG ACCGCTACGA CAAGAGCGAC GAGAAGTCCA CCTGCTGGGT GCGCGTGTCG
CAGCCCTGGG CGGGCAAGGG CTGGGGCGGG TACTTCATTC CGCGCATCGG GCAGGAGGTG
ATCGTCGACT TCCTGAATGG CGATCCCGAC CGGCCGATCA TCGTGGGCCG CGTCTACAAC
GACGACCAGC CGATCCCCTT CGGCTCGCAC ACGCAGAGCG GCTTTCGCAC GCGCTCCACG
CCCAAGGGCA GCGCGTCCAA CTGCAACGAG TTCCGCTTCG AGGACAAGAA GGGTTCGGAG
CAGGTGTACC TGCACGCCGA AAAAAACCAG GACATCGAGG TCGAGAACAA CGAGACCCAT
TGGGTGGGCC ACGACCGCAC CAAGACCATC GACCACGACG AGACCACGCA CGTCAAGCAC
GATCGCACCG AGACGGTCGA CAACAACGAG ACCATCACCG TGCACGGCCA GCGCACCGAA
ACGGTGGACA AGAACGAGAC CATCACGATC CACCAGAACC GCACGGAGAC GGTGGACCTG
AACGAGACCA TCTCCATCGG CCAGAACCGC TCGATCACGG TGGGTGCGAG CGAGACGGCC
ACGGTGGCAC TGCAGCGCAC GCATTCGGTG GGGATCAACG AGACCATCAC CGTGGGCGCG
GCGCAGGAGA TCACGGTGGG GGCGATGCAG GCGGTGACGG TGGGGGCGAG CCAGACGATC
AATGTGGGCG CGAACCAGTC GAGCAGCATC GGGGCGAACC GGTCGGTGGA TGTGGGGGCG
GACCTTTCCA CCACCGTGGG CAAGAACGAG TCGCGCAGCG TGGGCGAAGG GCGCACATCC
AGCGTGGGCA AGGACGACGC GCTCACAGTT GGGAAGAACC TCGTGATCGA TGCGGGCGAC
TCCATCTCCA TCAAGACAGG CAGCGCCAGC ATCACGATGA AGAAGGACGG GACCATTGTG
ATCAAGGGCA AGGACATCAC GATCGATGGC TCCGGAAAGA TCAACGTCAA GGCCAGCAGC
GACGTGGTGA TCAAGGGCTC GAAGATCTTG CAGAACTGA
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| Protein sequence | MADHEFRIES DSPANGELMF WRIVGHEALA RSSSYELTVL SKNHALDAKD ILGRAFDVVI
QFQDKDGGMH ERHCQGHAVR FERTGHVGRH FEYRIGLRSW FWLLTKRINS RILQEKKVLE
VLDAVLEDSP IRRFKKTRTS NVIGTHNPRR YCVQHQESDY QFLSRLLEDE GIYYWFDAHD
APGTMHLSDA SDIAHDKLPV EGTLRHMATD TTEARHNEIS RWVSARQFDT GTYASRDSDF
KAIKKKLEAA GGQPDKHELA EFEAFEFAGG YFTGADADDK GKLRGEEIAA RRQRHWALTT
WPDVAAGRSF TFEGDPDGTR DGDYVIAACI FAASHPGYES IPHATPRMPI EQALREALDD
DAVNAQARPA LEALIADAPA LRTDLQGTSA FLITAIPVDV PFRPPRLTPR VVMPGPQSAI
VVGPAGEEIH ADDFGRVKVH FHWDRYDKSD EKSTCWVRVS QPWAGKGWGG YFIPRIGQEV
IVDFLNGDPD RPIIVGRVYN DDQPIPFGSH TQSGFRTRST PKGSASNCNE FRFEDKKGSE
QVYLHAEKNQ DIEVENNETH WVGHDRTKTI DHDETTHVKH DRTETVDNNE TITVHGQRTE
TVDKNETITI HQNRTETVDL NETISIGQNR SITVGASETA TVALQRTHSV GINETITVGA
AQEITVGAMQ AVTVGASQTI NVGANQSSSI GANRSVDVGA DLSTTVGKNE SRSVGEGRTS
SVGKDDALTV GKNLVIDAGD SISIKTGSAS ITMKKDGTIV IKGKDITIDG SGKINVKASS
DVVIKGSKIL QN
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