| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0532 |
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| Symbol | |
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| ID | 7972942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 590557 |
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| End bp | 593169 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791135 |
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| Product | pentapeptide repeat protein |
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| Protein accession | YP_002942461 |
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| Protein GI | 239813551 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1357] Uncharacterized low-complexity proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATCA TCAAGCCCCA GACACTCGGG CTCTCGTTCA GGCCCATGGC GTTCCGCAAG
CGGTTCGGCC TGTCCGTGTC GGGCTACCTG CACGTCCCTT TCGCGCAGCC GGCGCAGGGC
TGTCTCTGGG GCGAGCAGTC GATGTGGAAT TTTCTCGGCG CCGAGATGGG GGTGCCCTTG
ATCGACGAGG GCATCGCCAA GCTGACGCCC GAGTTTCTCG TGCATGGCAA GGCCTTCGCG
GCGCCCGAGC GCCCCGAGGC CGTCGCGGTG CGCGCCCGGC TTGGCGGCAC CTCGAAGACC
CTGCTGGCAT TCGGGGAGCG CTACTGGGAC GGCGACGCGC CGAGCGCGCC GGCGCCGATG
CAGCCGCTGG CCCTGGACTG GCCCAATGCC TATGGCGGCG CGGACTTCGC CGAGAACCCG
TCGGGGCGCG GCCGCCAGGC CACCGACCGC ATTCGATGGC TGCCCGCCCT CGAATACCCG
GGCGACCGGC TGCGCAGGCC GGACCAGGCG GTGGCGCCCG CGGCCTTCAC GCCGCTCGAC
GTGCTGCATC CGCAGCGGGC GGCGCTGCGC GGCACCTACG ACGCCAACTG GCTGAAGGAG
CATGCACCCG GCTACGCGCC CGACCTGAAC TGGCAGCACT TCAACATGGC GCCGCGCGAC
CAGTGGATCG ATGCGCCCTT GCGCGGCGAC GAGACCTACG AGCTCGATCA CATGCATCCC
GAGCGCCCGC ACATCGAAGG CCGGCTGCCA GGTCTTCGCG TGCGTGCGTT CGCGCACTAC
CGGATGGGCG AGGGGGACAG CGCGGTCTTC AAGCTGCGTG AAATTCCGAT GCGGCTGACG
ACGGTGTGGT TCTTCCCGGC GGCGCAGCGG ATGGTTCTGG TCTTCCACGG CCTGGCTGAA
ACCGCCGAGG ACGACGCATC CGACATCCAC GATCTGCTCG GGGCGGTCGA GCGCATCGAT
CCGGCCGAGG CGCGCACTGG CGCGCACTAC CTGTCGGTGC TCGAGAAGCG CACGCGCGGC
CGCGACGCGG CGCTCGAGGC CCTGAACGAC GGCGATCTGC AGCCCGAGGG CCTGGACACC
GCCGATCCCT CGCTGGAAGC CCTGCAAGCC GTCATGAAGT CGCAAGGCCT GCAGGAGGCG
GCGCAGTACC GCCGCGCGCA AGTCGAGGTG CAGTTGGCGC GCGACTTCCT GCAGTCGAAG
GGCAGGGACC CCGATGCGCT CGGCGTCCGG CTGGCGCCCC GCGAAAAGCC GCCGACCGCC
GCCGAGATGC CGGCCTACCT GAAGAAGCTG CGCGAGCAGA TGGACGCGCA GCGTTGGGCG
GCGCTGGACG ACGCGGCAAC GCACGCCGAA ACCGCGATCG CCTTTGTCAA AAAGCACAAA
CCCGCCGCTG AAAAGCTCCA GCACCGCGGT CCGCCGCTCT TCAGCGCGAA GCAGCAGCTC
GCGGAACTGG AAAGCGCGCA CCGTACTGCC GGCAAGCCCT TCGACCGTGC GCGCATCGGT
ACCGCGCTCT GGCGCATGCA GAACTCGCTG CACGTCGACT ACCTGCAGAC GGCGCACCTG
CAGGCCGCCG CCGTTCCCCT TGCGGGCGAA GCCGCGGCGG CGAGCCGCCG CGAGGTGGCG
TTCTTGCTGC GAAGCCATCT GAAGCGGTGG CCGGGCATCG ACCTGACGGG CGCGGACCTG
TCGAACCTCG ATCTGCGCGG CGTCGATTTC ACCGGCGCCT GGCTGGAGAG CGCGAACCTG
CGCAACGCCA ACCTGTCGGG CGCGAAGCTG CAGGCCACGG TGCTGGCCCA CGCCGACCTG
CGTGGCGCGA TCGCCATCGG CGCCGACTTC CGTGCGGCCA ACCTCGGCGG CGCCGAATGC
GCACAGGCGG TGTTCGACAA CGCGAACCTG CAAGGCGCCA TCCTCGGTGG CACCCGGCTC
GGCCTGGCCC AGCTGCGCGG CGCGCGGCTG GCGCAGGCTC AATGGCTCGA CAGCGTCTGG
GCCGGAGCCG ACGCCTCGGC GATCGTGGCG CCGGGCATGC TGTTCTACAA GCTCGACATG
AGCGGGGCGC GGTTCGTCGA AGCCGTCCTG GCCAACTGCA GCTTCATCGA ATGCAACCTG
CAGGGCGCAG ACTTCAGCGG CGCGGATCTC GGCGCGGCCA GCCTGGTCGG CTGCAATGCC
GCGAACGCCC GCTTCGTCGG CGCCCGGATG GCTGGCGCGG TGGTGGTCAA GACCACACGC
CTGGCGGGAG CCGATTTCAC CGGCGCCATG CTGGTCAATG CCAACCTGGG CGAATGCGAC
CTGAGCGGCG CGCGGCTGGC GCGGGCGAAC CTCGCGGGGG CGAACTTCGG CATGGGCCTT
CTTTCGGACA GCGACCTGCG CCTGGCGAAC GCCAAAGGGG CGCTGTTTCG CAAGGCGGGG
CTGCAACGGG CCCGTCTCGC GGGCGCCAAC TTCCACGATG CCATCCTGCA GTCCGCCGAC
CTGCGCGGCG CGGATCTGCG CGAGGCCAAC CTCTTCGGCG CCGACCTGTC CCGCGTGCGG
CTCGATGGCG ACGCGAAGTT CGACGGGGCG TTGCTCGAAC GTGCGCGCAT CCACCCACGG
CTGACGCCGG AACAGCATGC GGGAGGGCGT TGA
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| Protein sequence | MQIIKPQTLG LSFRPMAFRK RFGLSVSGYL HVPFAQPAQG CLWGEQSMWN FLGAEMGVPL
IDEGIAKLTP EFLVHGKAFA APERPEAVAV RARLGGTSKT LLAFGERYWD GDAPSAPAPM
QPLALDWPNA YGGADFAENP SGRGRQATDR IRWLPALEYP GDRLRRPDQA VAPAAFTPLD
VLHPQRAALR GTYDANWLKE HAPGYAPDLN WQHFNMAPRD QWIDAPLRGD ETYELDHMHP
ERPHIEGRLP GLRVRAFAHY RMGEGDSAVF KLREIPMRLT TVWFFPAAQR MVLVFHGLAE
TAEDDASDIH DLLGAVERID PAEARTGAHY LSVLEKRTRG RDAALEALND GDLQPEGLDT
ADPSLEALQA VMKSQGLQEA AQYRRAQVEV QLARDFLQSK GRDPDALGVR LAPREKPPTA
AEMPAYLKKL REQMDAQRWA ALDDAATHAE TAIAFVKKHK PAAEKLQHRG PPLFSAKQQL
AELESAHRTA GKPFDRARIG TALWRMQNSL HVDYLQTAHL QAAAVPLAGE AAAASRREVA
FLLRSHLKRW PGIDLTGADL SNLDLRGVDF TGAWLESANL RNANLSGAKL QATVLAHADL
RGAIAIGADF RAANLGGAEC AQAVFDNANL QGAILGGTRL GLAQLRGARL AQAQWLDSVW
AGADASAIVA PGMLFYKLDM SGARFVEAVL ANCSFIECNL QGADFSGADL GAASLVGCNA
ANARFVGARM AGAVVVKTTR LAGADFTGAM LVNANLGECD LSGARLARAN LAGANFGMGL
LSDSDLRLAN AKGALFRKAG LQRARLAGAN FHDAILQSAD LRGADLREAN LFGADLSRVR
LDGDAKFDGA LLERARIHPR LTPEQHAGGR
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