| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0530 |
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| Symbol | |
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| ID | 7972940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 584776 |
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| End bp | 587505 |
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| Gene Length | 2730 bp |
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| Protein Length | 909 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791133 |
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| Product | type VI secretion ATPase, ClpV1 family |
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| Protein accession | YP_002942459 |
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| Protein GI | 239813549 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA TCAGTCGCAC CGCCCTTTTC GGCAAACTCA ACTCGCTGGC CTACAAGGCC
ATCGAGGGCG CCACGGTGTT CTGCAAGATG CGGGGCAATC CGTATGTGGA ACTGGAGCAC
TGGTTCGCCC AGCTGCTGCA GGCGCAGGAC TCCGACCTGC ACCGCGTGAT CCAGCACTAC
GGCCTCGACG TGTCGGTCAT CGCCAAGGAC ATGACGGCCG CGCTCGACCG CCTGCCGCGC
GGCGCCACCG CCATCAGCGA TTTTTCCCCG CACATCGAGA ACGCCATCGA GCGCGCCTGG
ACCTACGCCA CCCTGCAGTT CGGCGAAGCG CAGGTGCGCA CCGGCTACAT CCTGGTGGGC
ATGCTCAAGA CGCAGAGCCT GCGCAACCCG CTGTTCGGTT TGTCGAAGCA GTTCGAGAAG
GTCAAGGTCG AGGACCTGGC CGACAACTTC GCGAAGATCT GCGACGCCTC GCCCGAATCG
CAGATGCGCG CGCAGGACGG CACCGGCATG GGCAGCGGCG CGCCCGGCGA AGACTCGGGC
GCGATGGCGC CCGCCGCCAT GGGCAAGGGC GACGCGCTCA AGAAGTTCGC GGTCGACCTC
ACCGAGAAGG CCAAGAAGGG CGAGATGGAC CCGATCACCG GACGCGACGA GGAGATCCGC
CAGATCGTCG ACATCCTGAT GCGCCGCCGC CAGAACAACC CGCTGCTCAC GGGCGAGGCG
GGCGTTGGCA AGACCGCGGT GGTCGAAGGC TTCGCGCAGC GCCTCGCGCG CGGCGACGTG
CCGCCGCAGC TCAAGGACGT GAAGCTGCTC ACGCTCGACA TCGGCCTCTT GCAGGCCGGC
GCCAGCATGA AGGGCGAGTT CGAGCAGCGG CTGCGCCAGG TGATCGACGA GGTGCAGGCA
TCGCCCACGC CCATCATTCT TTTCATCGAC GAGATCCACA CGCTGGTGGG CGCGGGCGGC
GCGGCCGGCA CCGGCGATGC GGCCAACCTG CTGAAGCCCG CATTGGCGCG CGGCAACCTG
CGCACCATCG GCGCCACCAC CTGGGCCGAG TACAAGAAGT ACATCGAGAA AGACCCGGCG
CTGACGCGGC GCTTCCAGGT GGTGCAGGTG CCCGAGCCCG ACGAGGTGAA GGCCATCTTG
ATGCTGCGCG GCGTGGCCAG CGTGCTCGAG AAGCACCACC GCGTGCAGCT GCTCGACGAG
GCCATCGAGG CGGCCGTGAA GCTGAGCCAC CGCTACATTC CCGCGCGCCA ATTGCCCGAC
AAGGCCGTGA GCCTGCTCGA CACGGCATGC GCGCGCGTGG CTGTGAGTCA GCACGCGACG
CCGCCTGAAG TTGAAGACTG CATGCGCCGC ATCGAGGGAC TCACGGTCGA GCAGGAGATC
ATCGGCCGCG AGGAAGCCAT CGGCATCGAC GTGACCAAGC GCGCGGCGCA GGTCTCCGCG
CTGCTGCTGG AATCGAACGG GCAGCTGGAA ACGCTCAGCG CCCGCTGGAA GGAAGAGAAG
GGGCTGGTCG ATCGGTTGCT GGAATTGCGC AGCAAATTGC GTGCGGGGAG CAAGCCGGTG
GACACTGCTT CCGCCGAGGG CGATGCGAAA GCCGACGTGC CCCCACCCCA GCCCTCCCCC
GGCGGGGGAG GGAGCGAAGA CCGGGCTGCG CTGCTTGAAG AACTGCATGC GCTGCAGGCC
AAGATCCATG CGGTGCAAGG CGAGTCGCCA CTGATCCTGC CTTCGGTCGA TGAGCAGGCC
GTGGCCTCGG TGGTGGCCGA CTGGACCGGC ATTCCCGTCG GCCGCATGGT CAAGAACGAA
GTGGAGGCGG TGCTCAAGCT CGCCGACACG CTCAACCAGC GCGTCATCGG CCAGAAGCAC
GGCCTGGAGA TGATCGCGCG GCGCATCCAG ACGTCTCGCG CGCGGCTGGA CAACCCGCAA
AAGCCGATCG GCGTCTTCAT GCTCTGCGGC ACCTCGGGCG TGGGCAAGAC CGAGACCGCA
CTGGCACTGG CCGAGGCGCT GTACGGCGGC GAGCAGAACA TCATCACCAT CAACATGAGC
GAGTTCCAGG AGGCGCACAC GGTCTCCACG CTCAAGGGCG CGCCGCCCGG CTACGTGGGC
TACGGCGAGG GCGGCATCCT GACCGAGGCG GTGCGCCGCC GGCCCTACAG CGTGGTGCTG
CTCGACGAGG TCGAGAAGGC CCACCCCGAC GTGCACGAGA TCTTCTTCCA GGTGTTCGAC
AAGGGCTGGA TGGAAGACGG CGAGGGCCGC ATGATCGATT TCAAGAACAC GATCATCCTG
CTCACCACCA ACGCCGGCAG CGAGCTGGTG ATGAGCATGT GCCGCGACCC CGAGCTGCTG
CCCGATTCCA ACGCGCTGGC CGATGCGCTG AAAGCGCCGC TCATGAAGGT GTTCCCGCCC
GCGCTCCTGG GCCGCATCGT CACCATTCCC TACTACCCGC TGTCGCCGGA CATGATGAAG
AAGATCGTGC GGCTGCAGCT GGGCCGCATC AAGAAGCGCG TGGAGACCAA CCACGGCGTG
CCCTTCGAGT ACAGCGACGC GGTGGTCGAC CAGGTGGTTG CGCGCTGCCA GGACCCGGAG
TCGGGCGGGC GCGTGATCGA CGCGATCCTG ACCAACACGG TGCTGCCAAC GATTTCTGTC
GAGTACCTGC AGCGGCTGGC CTCGGGCGGC GAGATCCGCC GCGTCGCGCT CGATGTGAAG
GACGCCGACT TCACCTACGC GTTCGACTGA
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| Protein sequence | MSEISRTALF GKLNSLAYKA IEGATVFCKM RGNPYVELEH WFAQLLQAQD SDLHRVIQHY
GLDVSVIAKD MTAALDRLPR GATAISDFSP HIENAIERAW TYATLQFGEA QVRTGYILVG
MLKTQSLRNP LFGLSKQFEK VKVEDLADNF AKICDASPES QMRAQDGTGM GSGAPGEDSG
AMAPAAMGKG DALKKFAVDL TEKAKKGEMD PITGRDEEIR QIVDILMRRR QNNPLLTGEA
GVGKTAVVEG FAQRLARGDV PPQLKDVKLL TLDIGLLQAG ASMKGEFEQR LRQVIDEVQA
SPTPIILFID EIHTLVGAGG AAGTGDAANL LKPALARGNL RTIGATTWAE YKKYIEKDPA
LTRRFQVVQV PEPDEVKAIL MLRGVASVLE KHHRVQLLDE AIEAAVKLSH RYIPARQLPD
KAVSLLDTAC ARVAVSQHAT PPEVEDCMRR IEGLTVEQEI IGREEAIGID VTKRAAQVSA
LLLESNGQLE TLSARWKEEK GLVDRLLELR SKLRAGSKPV DTASAEGDAK ADVPPPQPSP
GGGGSEDRAA LLEELHALQA KIHAVQGESP LILPSVDEQA VASVVADWTG IPVGRMVKNE
VEAVLKLADT LNQRVIGQKH GLEMIARRIQ TSRARLDNPQ KPIGVFMLCG TSGVGKTETA
LALAEALYGG EQNIITINMS EFQEAHTVST LKGAPPGYVG YGEGGILTEA VRRRPYSVVL
LDEVEKAHPD VHEIFFQVFD KGWMEDGEGR MIDFKNTIIL LTTNAGSELV MSMCRDPELL
PDSNALADAL KAPLMKVFPP ALLGRIVTIP YYPLSPDMMK KIVRLQLGRI KKRVETNHGV
PFEYSDAVVD QVVARCQDPE SGGRVIDAIL TNTVLPTISV EYLQRLASGG EIRRVALDVK
DADFTYAFD
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